Multiple platform build/check report for BioC 3.22 - CHECK results for graper on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4898
lconway	macOS 12.7.6 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4688
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4634
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4658
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on lconway

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.25.2

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.25.2.tar.gz

StartedAt: 2025-10-23 21:34:32 -0400 (Thu, 23 Oct 2025)

EndedAt: 2025-10-23 21:35:50 -0400 (Thu, 23 Oct 2025)

EllapsedTime: 78.0 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.25.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.25.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.25.2’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-856.704
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-555.831
ELB improved by 300.874

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-498.638
ELB improved by 57.1928

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.349
ELB improved by 32.2886

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.189
ELB improved by 13.1604

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.352
ELB improved by 5.83671

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.511
ELB improved by 3.84106

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.119
ELB improved by 3.39184

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.649
ELB improved by 3.47077

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.97
ELB improved by 3.67847

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.259
ELB improved by 3.71069

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.912
ELB improved by 3.34723

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.275
ELB improved by 2.63676

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.399
ELB improved by 1.87606

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.098
ELB improved by 1.30154

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.153
ELB improved by 0.944393

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.415
ELB improved by 0.738454

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.794
ELB improved by 0.620995

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.241
ELB improved by 0.552806

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.73
ELB improved by 0.511119

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.247
ELB improved by 0.48272

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.787
ELB improved by 0.459961

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.349
ELB improved by 0.438632

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.932
ELB improved by 0.416771

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.538
ELB improved by 0.393816

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.168
ELB improved by 0.369925

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.823
ELB improved by 0.345568

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.501
ELB improved by 0.321469

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.202
ELB improved by 0.298691

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.924
ELB improved by 0.278485

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.662
ELB improved by 0.261888

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.413
ELB improved by 0.249401

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.172
ELB improved by 0.240998

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.935
ELB improved by 0.236326

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.7
ELB improved by 0.234891

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.464
ELB improved by 0.23617

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.225
ELB improved by 0.23966

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.98
ELB improved by 0.244913

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.728
ELB improved by 0.251593

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.469
ELB improved by 0.259526

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.2
ELB improved by 0.268664

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.921
ELB improved by 0.278637

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.634
ELB improved by 0.287496

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.344
ELB improved by 0.29022

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.063
ELB improved by 0.280224

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.808
ELB improved by 0.25559

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.586
ELB improved by 0.222021

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.398
ELB improved by 0.18731

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.242
ELB improved by 0.156271

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.111
ELB improved by 0.130716

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.001
ELB improved by 0.110918

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.904
ELB improved by 0.0965162

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.817
ELB improved by 0.086899

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.736
ELB improved by 0.0812726

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.657
ELB improved by 0.0785255

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.58
ELB improved by 0.077016

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.506
ELB improved by 0.0746305

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.436
ELB improved by 0.0695181

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.375
ELB improved by 0.0612289

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.324
ELB improved by 0.0510543

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.283
ELB improved by 0.0409952

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.25
ELB improved by 0.0324713

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.225
ELB improved by 0.0259206

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.203
ELB improved by 0.021139

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.186
ELB improved by 0.0177136

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.17
ELB improved by 0.0152571

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.157
ELB improved by 0.0134747

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.145
ELB improved by 0.0121567

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.134
ELB improved by 0.0111547

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.123
ELB improved by 0.0103597

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.114
ELB improved by 0.00969006

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-836.749
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-564.36
ELB improved by 272.388

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-506.803
ELB improved by 57.5568

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.749
ELB improved by 39.0543

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.272
ELB improved by 18.4772

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.13
ELB improved by 7.14194

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.79
ELB improved by 3.33968

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.8
ELB improved by 1.99066

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.345
ELB improved by 1.45503

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.143
ELB improved by 1.20156

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.096
ELB improved by 1.04735

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.163
ELB improved by 0.932375

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.328
ELB improved by 0.835157

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.58
ELB improved by 0.747892

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.912
ELB improved by 0.667846

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.318
ELB improved by 0.594117

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.792
ELB improved by 0.526417

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.327
ELB improved by 0.464628

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.919
ELB improved by 0.408647

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.56
ELB improved by 0.358331

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.247
ELB improved by 0.313477

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.973
ELB improved by 0.273813

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.734
ELB improved by 0.239011

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.525
ELB improved by 0.208705

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.343
ELB improved by 0.182512

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.183
ELB improved by 0.160056

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.042
ELB improved by 0.140971

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.917
ELB improved by 0.124908

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.805
ELB improved by 0.111535

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.705
ELB improved by 0.100538

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.613
ELB improved by 0.0916236

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.529
ELB improved by 0.0845235

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.45
ELB improved by 0.078997

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.375
ELB improved by 0.074834

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.303
ELB improved by 0.0718557

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.233
ELB improved by 0.0699143

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.164
ELB improved by 0.0688922

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.095
ELB improved by 0.0686997

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.026
ELB improved by 0.0692741

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.956
ELB improved by 0.070578

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.883
ELB improved by 0.0725983

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.808
ELB improved by 0.0753461

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.729
ELB improved by 0.0788571

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.646
ELB improved by 0.083192

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.557
ELB improved by 0.0884377

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.462
ELB improved by 0.0947083

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.36
ELB improved by 0.102145

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.249
ELB improved by 0.110917

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.128
ELB improved by 0.121217

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.995
ELB improved by 0.13326

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.848
ELB improved by 0.14728

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.684
ELB improved by 0.163522

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.502
ELB improved by 0.182244

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.298
ELB improved by 0.2037

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.07
ELB improved by 0.228133

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.814
ELB improved by 0.255736

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.528
ELB improved by 0.286605

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.207
ELB improved by 0.320676

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.849
ELB improved by 0.357671

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.452
ELB improved by 0.397123

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.014
ELB improved by 0.438569

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.532
ELB improved by 0.481937

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.004
ELB improved by 0.527578

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.43
ELB improved by 0.573884

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.82
ELB improved by 0.61009

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.208
ELB improved by 0.612223

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.645
ELB improved by 0.562672

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.169
ELB improved by 0.475895

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.784
ELB improved by 0.385187

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.469
ELB improved by 0.315156

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.192
ELB improved by 0.276768

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.917
ELB improved by 0.275621

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.601
ELB improved by 0.315747

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.213
ELB improved by 0.388309

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.753
ELB improved by 0.459142

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.254
ELB improved by 0.499188

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.756
ELB improved by 0.49865

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.31
ELB improved by 0.445701

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.941
ELB improved by 0.369092

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.63
ELB improved by 0.310414

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.358
ELB improved by 0.272092

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.129
ELB improved by 0.228847

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.96
ELB improved by 0.169353

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.848
ELB improved by 0.111931

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.776
ELB improved by 0.0719009

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.728
ELB improved by 0.0480131

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.694
ELB improved by 0.0340931

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.669
ELB improved by 0.0256557

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.648
ELB improved by 0.0202468

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.632
ELB improved by 0.0165922

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.618
ELB improved by 0.0140109

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.606
ELB improved by 0.0121189

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.595
ELB improved by 0.0106873

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.585
ELB improved by 0.0095737

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-877.824
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-571.319
ELB improved by 306.505

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-510.577
ELB improved by 60.7422

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.95
ELB improved by 37.6263

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.895
ELB improved by 15.055

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.917
ELB improved by 5.97792

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.167
ELB improved by 3.75025

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.973
ELB improved by 3.1942

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.935
ELB improved by 3.03761

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.911
ELB improved by 3.02432

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.848
ELB improved by 3.06261

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.77
ELB improved by 3.07856

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.792
ELB improved by 2.97742

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.112
ELB improved by 2.68071

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.894
ELB improved by 2.21799

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.172
ELB improved by 1.72116

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.869
ELB improved by 1.30386

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.869
ELB improved by 0.999737

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.078
ELB improved by 0.791316

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.428
ELB improved by 0.649875

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.875
ELB improved by 0.552531

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.391
ELB improved by 0.483717

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.958
ELB improved by 0.433435

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.562
ELB improved by 0.395789

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.194
ELB improved by 0.367721

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.846
ELB improved by 0.348076

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.509
ELB improved by 0.337122

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.173
ELB improved by 0.336342

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.825
ELB improved by 0.347961

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.452
ELB improved by 0.373064

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.044
ELB improved by 0.407864

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.601
ELB improved by 0.443459

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.125
ELB improved by 0.475745

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.613
ELB improved by 0.511756

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.052
ELB improved by 0.56098

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.424
ELB improved by 0.628342

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.71
ELB improved by 0.714088

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.896
ELB improved by 0.813535

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.981
ELB improved by 0.915389

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.98
ELB improved by 1.00104

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.932
ELB improved by 1.04756

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.897
ELB improved by 1.03547

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.938
ELB improved by 0.958202

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.111
ELB improved by 0.827807

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.438
ELB improved by 0.672389

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.915
ELB improved by 0.522801

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.518
ELB improved by 0.39768

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.217
ELB improved by 0.30074

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.989
ELB improved by 0.227908

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.815
ELB improved by 0.17367

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.682
ELB improved by 0.133351

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.579
ELB improved by 0.103338

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.498
ELB improved by 0.0808854

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.434
ELB improved by 0.0639439

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.383
ELB improved by 0.0510229

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.342
ELB improved by 0.0410596

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.309
ELB improved by 0.0333037

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.281
ELB improved by 0.0272241

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.259
ELB improved by 0.0224375

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.24
ELB improved by 0.0186594

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.225
ELB improved by 0.0156724

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.211
ELB improved by 0.0133067

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.2
ELB improved by 0.0114282

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.19
ELB improved by 0.00993067

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-873.6
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-617.247
ELB improved by 256.353

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-555.991
ELB improved by 61.2556

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-503.931
ELB improved by 52.0596

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.015
ELB improved by 30.9164

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.884
ELB improved by 13.131

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.68
ELB improved by 6.20435

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.223
ELB improved by 4.45634

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.209
ELB improved by 4.01393

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.232
ELB improved by 3.97694

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.12
ELB improved by 4.11214

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.836
ELB improved by 4.2841

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.572
ELB improved by 4.26425

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.764
ELB improved by 3.80762

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.811
ELB improved by 2.9532

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.773
ELB improved by 2.03787

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.429
ELB improved by 1.34402

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.512
ELB improved by 0.916909

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.837
ELB improved by 0.675276

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.3
ELB improved by 0.536982

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.848
ELB improved by 0.452452

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.452
ELB improved by 0.39575

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.099
ELB improved by 0.352949

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.783
ELB improved by 0.316106

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.502
ELB improved by 0.280854

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.256
ELB improved by 0.245448

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.046
ELB improved by 0.210476

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.868
ELB improved by 0.178089

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.718
ELB improved by 0.150266

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.59
ELB improved by 0.127597

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.481
ELB improved by 0.10951

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.385
ELB improved by 0.0950374

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.302
ELB improved by 0.0832986

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.229
ELB improved by 0.07363

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.163
ELB improved by 0.0655577

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.104
ELB improved by 0.0587412

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.051
ELB improved by 0.0529307

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.003
ELB improved by 0.0479379

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.96
ELB improved by 0.0436181

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.92
ELB improved by 0.0398582

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.883
ELB improved by 0.0365687

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.85
ELB improved by 0.0336779

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.819
ELB improved by 0.0311277

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.79
ELB improved by 0.0288707

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.763
ELB improved by 0.0268676

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.738
ELB improved by 0.0250857

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.714
ELB improved by 0.0234976

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.692
ELB improved by 0.02208

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.671
ELB improved by 0.0208132

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.652
ELB improved by 0.0196801

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.633
ELB improved by 0.0186663

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.615
ELB improved by 0.0177591

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.598
ELB improved by 0.0169474

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.582
ELB improved by 0.0162218

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.566
ELB improved by 0.0155739

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.551
ELB improved by 0.0149963

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.537
ELB improved by 0.0144827

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.523
ELB improved by 0.0140272

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.509
ELB improved by 0.0136248

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.496
ELB improved by 0.0132711

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.483
ELB improved by 0.0129622

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.47
ELB improved by 0.0126945

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.458
ELB improved by 0.0124648

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.446
ELB improved by 0.0122703

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.434
ELB improved by 0.0121086

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.422
ELB improved by 0.0119772

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.41
ELB improved by 0.0118743

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.398
ELB improved by 0.011798

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.386
ELB improved by 0.0117465

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.374
ELB improved by 0.0117183

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.363
ELB improved by 0.011712

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.351
ELB improved by 0.0117264

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.339
ELB improved by 0.0117601

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.327
ELB improved by 0.0118121

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.316
ELB improved by 0.0118813

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.304
ELB improved by 0.0119667

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.292
ELB improved by 0.0120672

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.279
ELB improved by 0.012182

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.267
ELB improved by 0.0123102

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.255
ELB improved by 0.0124507

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.242
ELB improved by 0.0126029

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.229
ELB improved by 0.0127657

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.216
ELB improved by 0.0129385

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.203
ELB improved by 0.0131204

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.19
ELB improved by 0.0133106

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.176
ELB improved by 0.0135084

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.163
ELB improved by 0.0137132

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.149
ELB improved by 0.0139245

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.135
ELB improved by 0.0141416

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.12
ELB improved by 0.0143644

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.106
ELB improved by 0.0145924

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.091
ELB improved by 0.0148257

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.076
ELB improved by 0.0150644

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.06
ELB improved by 0.0153088

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.045
ELB improved by 0.0155595

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.029
ELB improved by 0.0158173

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.013
ELB improved by 0.0160835

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.997
ELB improved by 0.0163594

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.98
ELB improved by 0.0166469

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.963
ELB improved by 0.0169483

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.946
ELB improved by 0.0172661

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.928
ELB improved by 0.0176035

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.91
ELB improved by 0.0179638

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.892
ELB improved by 0.0183512

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.873
ELB improved by 0.0187701

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.854
ELB improved by 0.0192256

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.834
ELB improved by 0.0197235

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.814
ELB improved by 0.0202702

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.793
ELB improved by 0.0208727

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.771
ELB improved by 0.021539

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.749
ELB improved by 0.0222782

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.726
ELB improved by 0.0231003

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.702
ELB improved by 0.0240169

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.677
ELB improved by 0.025041

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.651
ELB improved by 0.0261877

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.623
ELB improved by 0.0274745

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.594
ELB improved by 0.028922

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.564
ELB improved by 0.0305549

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.531
ELB improved by 0.0324027

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.497
ELB improved by 0.034502

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.46
ELB improved by 0.0368991

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.42
ELB improved by 0.039653

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.378
ELB improved by 0.042842

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.331
ELB improved by 0.0465712

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.28
ELB improved by 0.0509847

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.224
ELB improved by 0.0562812

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.161
ELB improved by 0.0627305

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.09
ELB improved by 0.0706778

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.01
ELB improved by 0.0805014

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.917
ELB improved by 0.0924447

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.811
ELB improved by 0.106228

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.691
ELB improved by 0.120493

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.558
ELB improved by 0.132626

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.418
ELB improved by 0.139769

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.278
ELB improved by 0.14063

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.142
ELB improved by 0.136085

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.014
ELB improved by 0.127984

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.896
ELB improved by 0.11789

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.789
ELB improved by 0.106804

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.693
ELB improved by 0.0953816

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.609
ELB improved by 0.0841251

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.536
ELB improved by 0.0734268

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.472
ELB improved by 0.0635635

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.418
ELB improved by 0.05469

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.371
ELB improved by 0.0468526

iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.331
ELB improved by 0.0400173

iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.297
ELB improved by 0.0341025

iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.268
ELB improved by 0.0290071

iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.243
ELB improved by 0.0246293

iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.222
ELB improved by 0.020877

iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.205
ELB improved by 0.0176703

iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.19
ELB improved by 0.0149403

iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.177
ELB improved by 0.0126268

iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.166
ELB improved by 0.0106759

iteration 155
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.157
ELB improved by 0.00903882

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.949   0.285   3.266

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.051	0.017	0.069
getPIPs	0.046	0.014	0.060
graper	0.079	0.021	0.101
makeExampleData	0.025	0.004	0.028
makeExampleDataWithUnequalGroups	0.009	0.000	0.010
plotELBO	0.324	0.019	0.344
plotGroupPenalties	1.359	0.050	1.415
plotPosterior	0.711	0.018	0.733
predict.graper	1.898	0.084	1.994
print.graper	0.045	0.011	0.057