Multiple platform build/check report for BioC 3.22 - CHECK results for graper on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4882
merida1	macOS 12.7.6 Monterey	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4673
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"	4607
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4671
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on nebbiolo2

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.26.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.26.0.tar.gz

StartedAt: 2025-12-12 01:06:29 -0500 (Fri, 12 Dec 2025)

EndedAt: 2025-12-12 01:07:59 -0500 (Fri, 12 Dec 2025)

EllapsedTime: 90.1 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.26.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... INFO
  installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.26.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c fit_graper.cpp -o fit_graper.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.22-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.22-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.22-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.22-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-884.64
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-592.903
ELB improved by 291.738

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-532.074
ELB improved by 60.8289

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-488.919
ELB improved by 43.1552

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.123
ELB improved by 22.7955

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.186
ELB improved by 10.9366

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.138
ELB improved by 6.04819

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.65
ELB improved by 4.4884

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.556
ELB improved by 4.0942

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.451
ELB improved by 4.10503

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.248
ELB improved by 4.20284

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.106
ELB improved by 4.14161

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.401
ELB improved by 3.70555

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.487
ELB improved by 2.91339

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.425
ELB improved by 2.06232

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.01
ELB improved by 1.41502

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.998
ELB improved by 1.01142

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.231
ELB improved by 0.767629

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.632
ELB improved by 0.599154

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.165
ELB improved by 0.46631

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.802
ELB improved by 0.363509

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.512
ELB improved by 0.289582

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.274
ELB improved by 0.237866

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.074
ELB improved by 0.200642

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.902
ELB improved by 0.17228

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.752
ELB improved by 0.149382

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.622
ELB improved by 0.130097

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.509
ELB improved by 0.113514

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.409
ELB improved by 0.0992223

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.322
ELB improved by 0.0870067

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.246
ELB improved by 0.0766728

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.178
ELB improved by 0.0679872

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.117
ELB improved by 0.0606913

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.062
ELB improved by 0.0545348

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.013
ELB improved by 0.0492994

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.968
ELB improved by 0.0448076

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.927
ELB improved by 0.0409205

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.89
ELB improved by 0.0375307

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.855
ELB improved by 0.0345555

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.823
ELB improved by 0.0319303

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.794
ELB improved by 0.0296039

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.766
ELB improved by 0.0275352

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.741
ELB improved by 0.0256902

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.716
ELB improved by 0.024041

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.694
ELB improved by 0.022564

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.673
ELB improved by 0.0212392

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.653
ELB improved by 0.0200495

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.634
ELB improved by 0.0189803

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.616
ELB improved by 0.018019

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.598
ELB improved by 0.0171543

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.582
ELB improved by 0.0163769

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.566
ELB improved by 0.0156784

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.551
ELB improved by 0.0150512

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.537
ELB improved by 0.0144891

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.523
ELB improved by 0.0139864

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.509
ELB improved by 0.013538

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.496
ELB improved by 0.0131396

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.483
ELB improved by 0.0127873

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.471
ELB improved by 0.0124776

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.459
ELB improved by 0.0122076

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.447
ELB improved by 0.0119746

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.435
ELB improved by 0.0117763

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.423
ELB improved by 0.0116108

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.412
ELB improved by 0.0114762

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.401
ELB improved by 0.0113712

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.389
ELB improved by 0.0112944

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.378
ELB improved by 0.0112449

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.367
ELB improved by 0.0112218

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.356
ELB improved by 0.0112246

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.344
ELB improved by 0.0112529

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.333
ELB improved by 0.0113065

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.322
ELB improved by 0.0113855

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.31
ELB improved by 0.01149

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.298
ELB improved by 0.0116204

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.287
ELB improved by 0.0117776

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.275
ELB improved by 0.0119624

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.263
ELB improved by 0.012176

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.25
ELB improved by 0.01242

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.237
ELB improved by 0.0126961

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.224
ELB improved by 0.0130068

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.211
ELB improved by 0.0133546

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.197
ELB improved by 0.0137427

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.183
ELB improved by 0.0141751

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.169
ELB improved by 0.0146561

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.153
ELB improved by 0.0151911

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.138
ELB improved by 0.0157864

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.121
ELB improved by 0.0164495

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.104
ELB improved by 0.0171893

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.086
ELB improved by 0.0180163

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.067
ELB improved by 0.0189434

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.047
ELB improved by 0.0199856

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.026
ELB improved by 0.0211614

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.003
ELB improved by 0.0224929

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.979
ELB improved by 0.0240072

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.954
ELB improved by 0.0257372

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.926
ELB improved by 0.0277235

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.896
ELB improved by 0.0300157

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.863
ELB improved by 0.0326755

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.827
ELB improved by 0.0357792

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.788
ELB improved by 0.0394211

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.744
ELB improved by 0.0437187

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.695
ELB improved by 0.0488167

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.641
ELB improved by 0.0548932

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.578
ELB improved by 0.0621644

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.507
ELB improved by 0.0708883

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.426
ELB improved by 0.0813655

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.332
ELB improved by 0.0939319

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.223
ELB improved by 0.108942

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.096
ELB improved by 0.126733

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.949
ELB improved by 0.147573

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.777
ELB improved by 0.171572

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.579
ELB improved by 0.198568

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.351
ELB improved by 0.227993

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.092
ELB improved by 0.258714

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.803
ELB improved by 0.288938

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.487
ELB improved by 0.316214

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.149
ELB improved by 0.337657

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.799
ELB improved by 0.350419

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.446
ELB improved by 0.352373

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.104
ELB improved by 0.342802

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.781
ELB improved by 0.322794

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.486
ELB improved by 0.295066

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.223
ELB improved by 0.263276

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.991
ELB improved by 0.231187

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.789
ELB improved by 0.202132

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.61
ELB improved by 0.178887

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.447
ELB improved by 0.163678

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.289
ELB improved by 0.157569

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.131
ELB improved by 0.158273

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.973
ELB improved by 0.15754

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.828
ELB improved by 0.145209

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.707
ELB improved by 0.120881

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.613
ELB improved by 0.0942518

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.54
ELB improved by 0.0729412

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.482
ELB improved by 0.0582784

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.433
ELB improved by 0.0487738

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.39
ELB improved by 0.042733

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.351
ELB improved by 0.0388806

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.315
ELB improved by 0.0363042

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.281
ELB improved by 0.0343383

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.248
ELB improved by 0.0325061

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.218
ELB improved by 0.0304952

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.19
ELB improved by 0.0281431

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.164
ELB improved by 0.0254273

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.142
ELB improved by 0.0224532

iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.122
ELB improved by 0.0194165

iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.106
ELB improved by 0.0165333

iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.092
ELB improved by 0.0139682

iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.08
ELB improved by 0.0117986

iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.07
ELB improved by 0.0100242

iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.061
ELB improved by 0.00859768

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-872.439
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-575.654
ELB improved by 296.785

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-515.208
ELB improved by 60.4462

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-479.198
ELB improved by 36.01

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.338
ELB improved by 13.8597

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.938
ELB improved by 5.40062

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.85
ELB improved by 3.08794

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.482
ELB improved by 2.36783

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.281
ELB improved by 2.20073

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.009
ELB improved by 2.27197

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.561
ELB improved by 2.44795

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.934
ELB improved by 2.62677

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.22
ELB improved by 2.71417

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.556
ELB improved by 2.66425

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.039
ELB improved by 2.51709

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.718
ELB improved by 2.32082

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.706
ELB improved by 2.01183

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.131
ELB improved by 1.57484

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.987
ELB improved by 1.14428

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.18
ELB improved by 0.807142

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.615
ELB improved by 0.564695

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.216
ELB improved by 0.398858

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.924
ELB improved by 0.291903

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.7
ELB improved by 0.224675

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.518
ELB improved by 0.181398

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.366
ELB improved by 0.152033

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.235
ELB improved by 0.13092

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.12
ELB improved by 0.114952

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.018
ELB improved by 0.102385

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.926
ELB improved by 0.0921925

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.842
ELB improved by 0.083735

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.766
ELB improved by 0.0765935

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.695
ELB improved by 0.0704793

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.63
ELB improved by 0.0651857

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.569
ELB improved by 0.0605589

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.513
ELB improved by 0.0564819

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.46
ELB improved by 0.0528632

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.41
ELB improved by 0.0496301

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.364
ELB improved by 0.0467241

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.32
ELB improved by 0.0440976

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.278
ELB improved by 0.0417114

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.238
ELB improved by 0.0395331

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.201
ELB improved by 0.037536

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.165
ELB improved by 0.0356976

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.131
ELB improved by 0.0339991

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.099
ELB improved by 0.0324249

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.068
ELB improved by 0.0309618

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.038
ELB improved by 0.0295984

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.01
ELB improved by 0.0283255

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.983
ELB improved by 0.0271351

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.957
ELB improved by 0.0260202

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.932
ELB improved by 0.0249752

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.908
ELB improved by 0.023995

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.885
ELB improved by 0.0230753

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.862
ELB improved by 0.0222123

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.841
ELB improved by 0.0214027

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.82
ELB improved by 0.0206436

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.8
ELB improved by 0.0199325

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.781
ELB improved by 0.0192669

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.762
ELB improved by 0.0186447

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.744
ELB improved by 0.0180641

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.727
ELB improved by 0.0175231

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.71
ELB improved by 0.0170203

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.693
ELB improved by 0.016554

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.677
ELB improved by 0.0161228

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.661
ELB improved by 0.0157254

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.646
ELB improved by 0.0153607

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.631
ELB improved by 0.0150274

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.616
ELB improved by 0.0147245

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.602
ELB improved by 0.014451

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.588
ELB improved by 0.0142059

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.574
ELB improved by 0.0139885

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.56
ELB improved by 0.0137979

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.546
ELB improved by 0.0136333

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.533
ELB improved by 0.0134941

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.519
ELB improved by 0.0133796

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.506
ELB improved by 0.0132891

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.493
ELB improved by 0.013222

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.48
ELB improved by 0.0131778

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.467
ELB improved by 0.0131558

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.453
ELB improved by 0.0131555

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.44
ELB improved by 0.0131763

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.427
ELB improved by 0.0132178

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.414
ELB improved by 0.0132794

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.4
ELB improved by 0.0133608

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.387
ELB improved by 0.0134615

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.373
ELB improved by 0.0135811

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.36
ELB improved by 0.0137195

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.346
ELB improved by 0.0138765

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.332
ELB improved by 0.014052

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.317
ELB improved by 0.0142462

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.303
ELB improved by 0.0144592

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.288
ELB improved by 0.0146914

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.273
ELB improved by 0.0149431

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.258
ELB improved by 0.0152151

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.243
ELB improved by 0.0155079

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.227
ELB improved by 0.0158224

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.211
ELB improved by 0.0161593

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.194
ELB improved by 0.0165198

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.177
ELB improved by 0.0169049

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.16
ELB improved by 0.0173158

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.142
ELB improved by 0.0177537

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.124
ELB improved by 0.0182203

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.105
ELB improved by 0.0187173

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.086
ELB improved by 0.0192467

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.066
ELB improved by 0.019811

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.046
ELB improved by 0.0204134

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.025
ELB improved by 0.0210581

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.003
ELB improved by 0.0217505

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.98
ELB improved by 0.0224981

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.957
ELB improved by 0.0233114

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.933
ELB improved by 0.0242058

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.908
ELB improved by 0.0252039

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.881
ELB improved by 0.0263403

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.854
ELB improved by 0.0276701

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.824
ELB improved by 0.0292836

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.793
ELB improved by 0.0313373

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.759
ELB improved by 0.0341157

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.721
ELB improved by 0.0381696

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.676
ELB improved by 0.0446376

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.62
ELB improved by 0.0560239

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.542
ELB improved by 0.0780195

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.419
ELB improved by 0.122715

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.212
ELB improved by 0.207179

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.887
ELB improved by 0.325266

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.456
ELB improved by 0.431118

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.957
ELB improved by 0.499196

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.469
ELB improved by 0.488073

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.047
ELB improved by 0.421498

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.669
ELB improved by 0.377651

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.284
ELB improved by 0.385894

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.809
ELB improved by 0.474912

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.098
ELB improved by 0.711101

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.053
ELB improved by 1.04494

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.975
ELB improved by 1.07794

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.163
ELB improved by 0.811764

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.569
ELB improved by 0.593378

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.109
ELB improved by 0.460015

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.751
ELB improved by 0.358336

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.481
ELB improved by 0.270323

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.28
ELB improved by 0.200562

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.132
ELB improved by 0.148215

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.023
ELB improved by 0.109454

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.941
ELB improved by 0.0812648

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.88
ELB improved by 0.0610339

iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.834
ELB improved by 0.0465446

iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.798
ELB improved by 0.0360918

iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.769
ELB improved by 0.0284423

iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.746
ELB improved by 0.0227346

iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.728
ELB improved by 0.0183828

iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.713
ELB improved by 0.0149966

iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.701
ELB improved by 0.0123194

iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.691
ELB improved by 0.0101808

iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.682
ELB improved by 0.00846416

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-838.684
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-558.847
ELB improved by 279.837

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-498.195
ELB improved by 60.6517

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.896
ELB improved by 40.2996

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.065
ELB improved by 17.8309

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.678
ELB improved by 7.3866

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.195
ELB improved by 4.48293

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.547
ELB improved by 3.64858

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.146
ELB improved by 3.40071

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.766
ELB improved by 3.38033

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.319
ELB improved by 3.44646

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.798
ELB improved by 3.52152

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.271
ELB improved by 3.52619

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.901
ELB improved by 3.37029

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.895
ELB improved by 3.0061

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.385
ELB improved by 2.50963

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.37
ELB improved by 2.01555

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.821
ELB improved by 1.54942

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.702
ELB improved by 1.11893

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.913
ELB improved by 0.788845

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.342
ELB improved by 0.57065

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.911
ELB improved by 0.43133

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.572
ELB improved by 0.338905

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.298
ELB improved by 0.273547

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.074
ELB improved by 0.224631

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.887
ELB improved by 0.186676

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.73
ELB improved by 0.156701

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.597
ELB improved by 0.132838

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.484
ELB improved by 0.113727

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.385
ELB improved by 0.0983065

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.3
ELB improved by 0.0857414

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.224
ELB improved by 0.0753883

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.158
ELB improved by 0.0667612

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.098
ELB improved by 0.0594955

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.045
ELB improved by 0.0533178

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.997
ELB improved by 0.0480212

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.953
ELB improved by 0.043447

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.914
ELB improved by 0.0394716

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.878
ELB improved by 0.0359977

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.845
ELB improved by 0.0329474

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.815
ELB improved by 0.0302575

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.787
ELB improved by 0.0278763

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.761
ELB improved by 0.025761

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.737
ELB improved by 0.0238759

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.715
ELB improved by 0.0221911

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.694
ELB improved by 0.0206814

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.675
ELB improved by 0.019325

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.657
ELB improved by 0.0181036

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.64
ELB improved by 0.0170013

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.624
ELB improved by 0.0160045

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.609
ELB improved by 0.0151013

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.594
ELB improved by 0.0142814

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.581
ELB improved by 0.0135358

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.568
ELB improved by 0.0128565

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.556
ELB improved by 0.0122367

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.544
ELB improved by 0.0116703

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.533
ELB improved by 0.0111517

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.522
ELB improved by 0.0106763

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.512
ELB improved by 0.0102397

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.502
ELB improved by 0.00983812

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-846.088
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-562.88
ELB improved by 283.208

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-502.037
ELB improved by 60.843

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.462
ELB improved by 39.5748

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.702
ELB improved by 17.7597

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.865
ELB improved by 6.83757

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.425
ELB improved by 3.43953

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.216
ELB improved by 2.20872

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.564
ELB improved by 1.65288

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.183
ELB improved by 1.38083

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.953
ELB improved by 1.22941

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.821
ELB improved by 1.13195

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.759
ELB improved by 1.06212

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.75
ELB improved by 1.00935

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.781
ELB improved by 0.969276

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.841
ELB improved by 0.93963

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.923
ELB improved by 0.918395

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.02
ELB improved by 0.902805

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.131
ELB improved by 0.888802

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.26
ELB improved by 0.870899

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.417
ELB improved by 0.842725

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.619
ELB improved by 0.798522

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.883
ELB improved by 0.735488

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.227
ELB improved by 0.655953

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.66
ELB improved by 0.567661

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.179
ELB improved by 0.481159

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.773
ELB improved by 0.405697

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.427
ELB improved by 0.346383

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.123
ELB improved by 0.304022

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.846
ELB improved by 0.27673

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.584
ELB improved by 0.261664

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.328
ELB improved by 0.256031

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.071
ELB improved by 0.257424

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.807
ELB improved by 0.263852

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.533
ELB improved by 0.273699

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.247
ELB improved by 0.285706

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.948
ELB improved by 0.29899

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.635
ELB improved by 0.313121

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.307
ELB improved by 0.328214

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.962
ELB improved by 0.344973

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.598
ELB improved by 0.364591

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.209
ELB improved by 0.388393

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.792
ELB improved by 0.417278

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.34
ELB improved by 0.451421

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.85
ELB improved by 0.490843

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.313
ELB improved by 0.536379

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.724
ELB improved by 0.589611

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.072
ELB improved by 0.651622

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.35
ELB improved by 0.721733

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.554
ELB improved by 0.796429

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.686
ELB improved by 0.867747

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.764
ELB improved by 0.92166

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.824
ELB improved by 0.940078

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.914
ELB improved by 0.909863

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.082
ELB improved by 0.832126

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.361
ELB improved by 0.721314

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.759
ELB improved by 0.60231

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.249
ELB improved by 0.509408

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.774
ELB improved by 0.475229

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.253
ELB improved by 0.521065

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.633
ELB improved by 0.620103

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.005
ELB improved by 0.627717

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.52
ELB improved by 0.484769

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.179
ELB improved by 0.340989

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.913
ELB improved by 0.266775

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.666
ELB improved by 0.246457

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.417
ELB improved by 0.248791

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.181
ELB improved by 0.236396

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.99
ELB improved by 0.191251

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.856
ELB improved by 0.133899

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.768
ELB improved by 0.0883388

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.708
ELB improved by 0.0594285

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.666
ELB improved by 0.0424943

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.633
ELB improved by 0.0325214

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.607
ELB improved by 0.0263193

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.585
ELB improved by 0.0221558

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.565
ELB improved by 0.0191415

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.549
ELB improved by 0.0168227

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.534
ELB improved by 0.0149606

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.52
ELB improved by 0.0134217

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.508
ELB improved by 0.0121258

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.497
ELB improved by 0.0110202

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.487
ELB improved by 0.0100684

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.478
ELB improved by 0.00924332

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.406   0.158   2.552

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.051	0.002	0.053
getPIPs	0.044	0.009	0.054
graper	0.080	0.006	0.086
makeExampleData	0.009	0.002	0.011
makeExampleDataWithUnequalGroups	0.009	0.003	0.012
plotELBO	0.333	0.027	0.359
plotGroupPenalties	1.081	0.051	1.132
plotPosterior	0.64	0.01	0.65
predict.graper	2.047	0.016	2.063
print.graper	0.046	0.005	0.051