Multiple platform build/check report for BioC 3.22 - CHECK results for graper on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4898
lconway	macOS 12.7.6 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4688
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4634
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4658
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on kjohnson3

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.25.2

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.25.2.tar.gz

StartedAt: 2025-10-23 20:11:45 -0400 (Thu, 23 Oct 2025)

EndedAt: 2025-10-23 20:12:12 -0400 (Thu, 23 Oct 2025)

EllapsedTime: 27.3 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.25.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.25.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.25.2’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-855.505
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-587.526
ELB improved by 267.978

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-525.307
ELB improved by 62.2193

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.962
ELB improved by 47.3445

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.791
ELB improved by 23.1717

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.007
ELB improved by 9.78382

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.691
ELB improved by 5.31601

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.833
ELB improved by 3.85794

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.473
ELB improved by 3.35994

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.277
ELB improved by 3.1963

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.169
ELB improved by 3.10728

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.2
ELB improved by 2.96923

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.485
ELB improved by 2.71508

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.145
ELB improved by 2.34047

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.243
ELB improved by 1.90203

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.759
ELB improved by 1.48405

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.61
ELB improved by 1.14843

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.706
ELB improved by 0.904076

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.978
ELB improved by 0.727965

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.381
ELB improved by 0.597186

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.883
ELB improved by 0.497516

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.463
ELB improved by 0.420255

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.103
ELB improved by 0.35997

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.79
ELB improved by 0.313316

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.512
ELB improved by 0.277975

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.26
ELB improved by 0.252044

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.026
ELB improved by 0.233904

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.804
ELB improved by 0.222256

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.588
ELB improved by 0.21614

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.373
ELB improved by 0.21491

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.154
ELB improved by 0.218185

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.929
ELB improved by 0.2258

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.691
ELB improved by 0.237764

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.437
ELB improved by 0.254225

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.161
ELB improved by 0.275422

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.86
ELB improved by 0.301632

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.526
ELB improved by 0.333085

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.157
ELB improved by 0.369829

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.745
ELB improved by 0.411557

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.288
ELB improved by 0.457388

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.782
ELB improved by 0.505675

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.228
ELB improved by 0.553923

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.629
ELB improved by 0.598945

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.992
ELB improved by 0.637216

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.327
ELB improved by 0.665112

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.648
ELB improved by 0.678619

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.975
ELB improved by 0.67348

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.326
ELB improved by 0.648891

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.712
ELB improved by 0.613538

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.128
ELB improved by 0.584572

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.552
ELB improved by 0.576146

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.966
ELB improved by 0.585497

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.38
ELB improved by 0.58649

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.844
ELB improved by 0.53546

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.41
ELB improved by 0.434572

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.037
ELB improved by 0.372576

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.649
ELB improved by 0.388497

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.225
ELB improved by 0.423548

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.839
ELB improved by 0.386157

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.559
ELB improved by 0.279888

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.377
ELB improved by 0.182043

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.257
ELB improved by 0.120132

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.173
ELB improved by 0.0838215

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.112
ELB improved by 0.0613325

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.065
ELB improved by 0.0463201

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.029
ELB improved by 0.0357737

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.001
ELB improved by 0.0281527

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.979
ELB improved by 0.0225482

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.96
ELB improved by 0.0183656

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.945
ELB improved by 0.0151981

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.932
ELB improved by 0.0127634

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.922
ELB improved by 0.0108648

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.912
ELB improved by 0.00936396

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-876.027
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-566.813
ELB improved by 309.213

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-505.276
ELB improved by 61.5372

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.3
ELB improved by 37.976

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.808
ELB improved by 16.4915

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.349
ELB improved by 7.45969

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.218
ELB improved by 5.13064

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.432
ELB improved by 4.78573

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.479
ELB improved by 4.9533

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.148
ELB improved by 5.331

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.402
ELB improved by 5.74585

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.499
ELB improved by 5.90353

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.045
ELB improved by 5.45338

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.631
ELB improved by 4.41414

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.439
ELB improved by 3.19238

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.27
ELB improved by 2.16851

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.806
ELB improved by 1.4642

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.8
ELB improved by 1.00594

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.077
ELB improved by 0.723004

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.518
ELB improved by 0.559636

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.048
ELB improved by 0.469165

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.627
ELB improved by 0.421271

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.228
ELB improved by 0.399508

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.832
ELB improved by 0.395837

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.425
ELB improved by 0.406917

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.993
ELB improved by 0.432217

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.52
ELB improved by 0.472893

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.99
ELB improved by 0.530071

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.388
ELB improved by 0.60181

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.705
ELB improved by 0.682656

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.933
ELB improved by 0.77253

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.047
ELB improved by 0.886085

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.001
ELB improved by 1.04603

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.758
ELB improved by 1.2425

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.396
ELB improved by 1.3624

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.074
ELB improved by 1.3214

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.875
ELB improved by 1.19884

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.808
ELB improved by 1.06703

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.85
ELB improved by 0.957876

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.97
ELB improved by 0.880221

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.164
ELB improved by 0.806651

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.451
ELB improved by 0.713072

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.838
ELB improved by 0.612272

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.316
ELB improved by 0.522513

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.86
ELB improved by 0.455653

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.447
ELB improved by 0.41304

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.059
ELB improved by 0.388162

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.686
ELB improved by 0.372986

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.326
ELB improved by 0.359886

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.984
ELB improved by 0.342409

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.667
ELB improved by 0.317053

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.382
ELB improved by 0.284344

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.135
ELB improved by 0.247455

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.925
ELB improved by 0.209936

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.75
ELB improved by 0.174512

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.607
ELB improved by 0.142883

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.492
ELB improved by 0.115853

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.398
ELB improved by 0.0935406

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.322
ELB improved by 0.0756003

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.261
ELB improved by 0.0614443

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.211
ELB improved by 0.0504077

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.169
ELB improved by 0.0418554

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.133
ELB improved by 0.0352348

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.103
ELB improved by 0.0300929

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.077
ELB improved by 0.0260729

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.054
ELB improved by 0.0229008

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.034
ELB improved by 0.0203704

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.016
ELB improved by 0.0183275

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.999
ELB improved by 0.0166578

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.984
ELB improved by 0.0152768

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.97
ELB improved by 0.0141213

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.957
ELB improved by 0.0131442

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.944
ELB improved by 0.0123101

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.933
ELB improved by 0.0115918

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.922
ELB improved by 0.0109683

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.911
ELB improved by 0.0104234

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.901
ELB improved by 0.00994413

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-917.435
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-600.912
ELB improved by 316.523

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-538.316
ELB improved by 62.5956

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-495.625
ELB improved by 42.6906

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.909
ELB improved by 22.7165

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.915
ELB improved by 9.9944

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.354
ELB improved by 5.56095

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.789
ELB improved by 4.56476

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.42
ELB improved by 4.36908

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.012
ELB improved by 4.40779

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.535
ELB improved by 4.47712

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.104
ELB improved by 4.43075

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.957
ELB improved by 4.14744

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.359
ELB improved by 3.5977

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.478
ELB improved by 2.88053

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.321
ELB improved by 2.15699

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.773
ELB improved by 1.5481

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.674
ELB improved by 1.09935

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.873
ELB improved by 0.801295

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.259
ELB improved by 0.613206

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.771
ELB improved by 0.488262

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.377
ELB improved by 0.394404

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.057
ELB improved by 0.319894

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.794
ELB improved by 0.262845

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.573
ELB improved by 0.220885

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.383
ELB improved by 0.190057

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.216
ELB improved by 0.16679

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.068
ELB improved by 0.148638

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.934
ELB improved by 0.134079

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.811
ELB improved by 0.122166

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.699
ELB improved by 0.112285

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.595
ELB improved by 0.104015

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.498
ELB improved by 0.0970514

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.407
ELB improved by 0.0911674

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.321
ELB improved by 0.0861891

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.239
ELB improved by 0.0819817

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.16
ELB improved by 0.0784395

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.085
ELB improved by 0.0754796

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.012
ELB improved by 0.0730362

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.941
ELB improved by 0.0710558

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.871
ELB improved by 0.069491

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.803
ELB improved by 0.0682944

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.736
ELB improved by 0.06741

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.669
ELB improved by 0.0667652

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.603
ELB improved by 0.0662665

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.537
ELB improved by 0.0658021

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.471
ELB improved by 0.0652567

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.407
ELB improved by 0.0645354

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.343
ELB improved by 0.0635883

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.281
ELB improved by 0.0624215

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.22
ELB improved by 0.0610868

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.16
ELB improved by 0.0596585

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.102
ELB improved by 0.0582079

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.045
ELB improved by 0.056788

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.99
ELB improved by 0.0554307

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.936
ELB improved by 0.0541501

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.883
ELB improved by 0.0529492

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.831
ELB improved by 0.0518257

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.78
ELB improved by 0.0507754

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.73
ELB improved by 0.0497944

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.681
ELB improved by 0.0488789

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.633
ELB improved by 0.0480247

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.586
ELB improved by 0.0472252

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.54
ELB improved by 0.046468

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.494
ELB improved by 0.0457309

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.449
ELB improved by 0.0449765

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.405
ELB improved by 0.0441488

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.362
ELB improved by 0.0431752

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.32
ELB improved by 0.0419762

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.279
ELB improved by 0.0404879

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.24
ELB improved by 0.0386873

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.204
ELB improved by 0.0366103

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.169
ELB improved by 0.034347

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.137
ELB improved by 0.0320159

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.108
ELB improved by 0.0297301

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.08
ELB improved by 0.0275739

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.055
ELB improved by 0.0255955

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.031
ELB improved by 0.0238125

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.009
ELB improved by 0.0222224

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.988
ELB improved by 0.0208119

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.968
ELB improved by 0.019563

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.95
ELB improved by 0.0184576

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.932
ELB improved by 0.0174785

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.916
ELB improved by 0.0166111

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.9
ELB improved by 0.0158427

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.885
ELB improved by 0.0151631

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.87
ELB improved by 0.0145641

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.856
ELB improved by 0.0140393

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.842
ELB improved by 0.013584

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.829
ELB improved by 0.013195

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.816
ELB improved by 0.0128707

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.804
ELB improved by 0.0126109

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.791
ELB improved by 0.0124173

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.779
ELB improved by 0.0122933

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.767
ELB improved by 0.012245

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.755
ELB improved by 0.0122816

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.742
ELB improved by 0.0124167

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.729
ELB improved by 0.0126699

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.716
ELB improved by 0.0130694

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.703
ELB improved by 0.0136564

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.688
ELB improved by 0.0144918

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.673
ELB improved by 0.0156674

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.655
ELB improved by 0.0173249

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.636
ELB improved by 0.0196882

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.612
ELB improved by 0.0231209

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.584
ELB improved by 0.0282247

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.548
ELB improved by 0.0360002

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.5
ELB improved by 0.048053

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.434
ELB improved by 0.06663

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.34
ELB improved by 0.0936917

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.212
ELB improved by 0.127858

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.05
ELB improved by 0.161538

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.864
ELB improved by 0.185931

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.666
ELB improved by 0.198234

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.469
ELB improved by 0.197429

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.286
ELB improved by 0.183308

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.124
ELB improved by 0.161028

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.987
ELB improved by 0.137204

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.872
ELB improved by 0.11544

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.775
ELB improved by 0.0968407

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.694
ELB improved by 0.0814753

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.624
ELB improved by 0.0690552

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.565
ELB improved by 0.0591668

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.514
ELB improved by 0.0513881

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.469
ELB improved by 0.0453707

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.428
ELB improved by 0.0408929

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.39
ELB improved by 0.0378825

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.353
ELB improved by 0.0364221

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.317
ELB improved by 0.0367535

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.277
ELB improved by 0.0392967

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.233
ELB improved by 0.044677

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.179
ELB improved by 0.0537058

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.112
ELB improved by 0.0671749

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.026
ELB improved by 0.0852467

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.92
ELB improved by 0.106345

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.794
ELB improved by 0.126123

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.656
ELB improved by 0.138153

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.518
ELB improved by 0.137874

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.391
ELB improved by 0.126933

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.28
ELB improved by 0.111474

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.183
ELB improved by 0.0964919

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.099
ELB improved by 0.0836667

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.027
ELB improved by 0.0725811

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.965
ELB improved by 0.0623474

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.912
ELB improved by 0.0525204

iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.869
ELB improved by 0.0432248

iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.834
ELB improved by 0.0348445

iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.806
ELB improved by 0.0276851

iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.784
ELB improved by 0.0218331

iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.767
ELB improved by 0.0171915

iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.754
ELB improved by 0.0135751

iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.743
ELB improved by 0.0107832

iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.734
ELB improved by 0.00863675

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-871.377
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-584.086
ELB improved by 287.291

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-525.636
ELB improved by 58.4501

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-482.701
ELB improved by 42.9348

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.939
ELB improved by 20.7622

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.964
ELB improved by 7.97524

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.268
ELB improved by 4.6964

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.123
ELB improved by 4.14453

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.845
ELB improved by 4.27827

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.131
ELB improved by 4.71432

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.911
ELB improved by 5.21971

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.466
ELB improved by 5.44476

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.438
ELB improved by 5.02766

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.433
ELB improved by 4.00547

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.573
ELB improved by 2.8598

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.584
ELB improved by 1.98957

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.17
ELB improved by 1.4139

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.145
ELB improved by 1.02425

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.379
ELB improved by 0.76674

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.777
ELB improved by 0.601682

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.286
ELB improved by 0.490865

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.877
ELB improved by 0.409256

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.53
ELB improved by 0.346458

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.231
ELB improved by 0.299548

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.964
ELB improved by 0.26636

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.721
ELB improved by 0.243434

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.495
ELB improved by 0.226405

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.284
ELB improved by 0.210881

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.09
ELB improved by 0.19404

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.914
ELB improved by 0.176012

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.755
ELB improved by 0.158948

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.61
ELB improved by 0.144662

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.477
ELB improved by 0.133602

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.351
ELB improved by 0.125313

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.232
ELB improved by 0.119105

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.118
ELB improved by 0.114371

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.007
ELB improved by 0.110659

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.899
ELB improved by 0.107647

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.794
ELB improved by 0.105106

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.691
ELB improved by 0.102871

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.591
ELB improved by 0.100825

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.492
ELB improved by 0.0988896

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.395
ELB improved by 0.0970132

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.3
ELB improved by 0.0951699

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.206
ELB improved by 0.093353

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.115
ELB improved by 0.0915707

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.025
ELB improved by 0.0898417

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.937
ELB improved by 0.0881917

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.85
ELB improved by 0.0866495

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.765
ELB improved by 0.0852449

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.681
ELB improved by 0.084006

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.598
ELB improved by 0.0829579

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.516
ELB improved by 0.0821217

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.434
ELB improved by 0.0815136

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.353
ELB improved by 0.0811445

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.272
ELB improved by 0.0810204

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.191
ELB improved by 0.0811419

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.109
ELB improved by 0.0815044

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.027
ELB improved by 0.0820989

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.944
ELB improved by 0.082912

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.86
ELB improved by 0.0839267

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.775
ELB improved by 0.0851238

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.689
ELB improved by 0.0864833

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.601
ELB improved by 0.0879873

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.511
ELB improved by 0.0896239

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.42
ELB improved by 0.0913923

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.326
ELB improved by 0.0933112

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.231
ELB improved by 0.0954302

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.133
ELB improved by 0.0978467

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.032
ELB improved by 0.100734

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.928
ELB improved by 0.104385

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.819
ELB improved by 0.109288

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.702
ELB improved by 0.116247

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.576
ELB improved by 0.126546

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.434
ELB improved by 0.142041

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.269
ELB improved by 0.164657

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.075
ELB improved by 0.193971

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.853
ELB improved by 0.222763

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.614
ELB improved by 0.238329

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.377
ELB improved by 0.236795

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.148
ELB improved by 0.229135

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.92
ELB improved by 0.228047

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.68
ELB improved by 0.240132

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.416
ELB improved by 0.263601

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.136
ELB improved by 0.280252

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.872
ELB improved by 0.264274

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.652
ELB improved by 0.220145

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.478
ELB improved by 0.173376

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.344
ELB improved by 0.134639

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.24
ELB improved by 0.103737

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.16
ELB improved by 0.0796192

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.099
ELB improved by 0.0615415

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.05
ELB improved by 0.0485439

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.011
ELB improved by 0.0395393

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.977
ELB improved by 0.0335866

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.947
ELB improved by 0.0300349

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.919
ELB improved by 0.0285536

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.889
ELB improved by 0.0291476

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.857
ELB improved by 0.0322539

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.818
ELB improved by 0.0390229

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.766
ELB improved by 0.0518519

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.692
ELB improved by 0.0745519

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.583
ELB improved by 0.108562

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.443
ELB improved by 0.140105

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.304
ELB improved by 0.13944

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.2
ELB improved by 0.103628

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.137
ELB improved by 0.0630276

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.101
ELB improved by 0.0355893

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.081
ELB improved by 0.0205668

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.068
ELB improved by 0.0128902

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.059
ELB improved by 0.00894622

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  1.034   0.076   1.111

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.028	0.007	0.035
getPIPs	0.027	0.007	0.034
graper	0.050	0.009	0.060
makeExampleData	0.004	0.000	0.004
makeExampleDataWithUnequalGroups	0.005	0.000	0.005
plotELBO	0.124	0.008	0.133
plotGroupPenalties	0.424	0.012	0.435
plotPosterior	0.221	0.011	0.231
predict.graper	1.021	0.025	1.047
print.graper	0.027	0.005	0.032