Britta Velten
| Snapshot Date: 2025-12-04 13:45 -0500 (Thu, 04 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_22 |
| git_last_commit: 76fc31b |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-08 12:01 -0500 (Mon, 08 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4879 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4668 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4669 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 922/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.26.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.26.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.26.0.tar.gz |
| StartedAt: 2025-12-05 05:35:36 -0500 (Fri, 05 Dec 2025) |
| EndedAt: 2025-12-05 05:38:06 -0500 (Fri, 05 Dec 2025) |
| EllapsedTime: 150.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.26.0’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-864.971
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-597.635
ELB improved by 267.335
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-536.307
ELB improved by 61.3286
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-489.159
ELB improved by 47.1479
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.566
ELB improved by 23.5932
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.454
ELB improved by 9.11153
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.626
ELB improved by 4.82791
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.701
ELB improved by 3.92474
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444
ELB improved by 3.70177
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.344
ELB improved by 3.65571
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.649
ELB improved by 3.69474
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.894
ELB improved by 3.75489
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.177
ELB improved by 3.71695
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.747
ELB improved by 3.43008
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.903
ELB improved by 2.84377
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.786
ELB improved by 2.11729
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.302
ELB improved by 1.48451
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.262
ELB improved by 1.04
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.51
ELB improved by 0.751692
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.945
ELB improved by 0.565348
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.5
ELB improved by 0.444137
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.135
ELB improved by 0.365009
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.823
ELB improved by 0.312463
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.547
ELB improved by 0.27586
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.3
ELB improved by 0.247619
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.077
ELB improved by 0.222334
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.88
ELB improved by 0.197182
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.708
ELB improved by 0.172227
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.559
ELB improved by 0.14918
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.429
ELB improved by 0.129466
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.316
ELB improved by 0.113387
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.215
ELB improved by 0.100463
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.125
ELB improved by 0.0900113
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.044
ELB improved by 0.0814458
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.969
ELB improved by 0.0743425
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.901
ELB improved by 0.0684072
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.838
ELB improved by 0.063433
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.778
ELB improved by 0.0592696
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.723
ELB improved by 0.0558039
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.67
ELB improved by 0.0529487
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.619
ELB improved by 0.0506361
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.57
ELB improved by 0.0488126
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.523
ELB improved by 0.0474368
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.476
ELB improved by 0.0464771
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.43
ELB improved by 0.0459101
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.385
ELB improved by 0.0457198
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.339
ELB improved by 0.0458968
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.292
ELB improved by 0.0464377
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.245
ELB improved by 0.047345
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.196
ELB improved by 0.0486264
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.146
ELB improved by 0.0502955
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.094
ELB improved by 0.0523712
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.039
ELB improved by 0.0548784
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.981
ELB improved by 0.0578483
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.92
ELB improved by 0.061319
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.854
ELB improved by 0.0653366
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.784
ELB improved by 0.0699568
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.709
ELB improved by 0.0752462
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.628
ELB improved by 0.0812858
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.54
ELB improved by 0.0881746
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.444
ELB improved by 0.096035
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.339
ELB improved by 0.105022
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.223
ELB improved by 0.115334
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.096
ELB improved by 0.127239
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.955
ELB improved by 0.14111
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.797
ELB improved by 0.157492
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.62
ELB improved by 0.177236
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.418
ELB improved by 0.201738
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.185
ELB improved by 0.233366
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.909
ELB improved by 0.276102
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.573
ELB improved by 0.33595
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.154
ELB improved by 0.419229
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.628
ELB improved by 0.525963
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.984
ELB improved by 0.644234
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.222
ELB improved by 0.761638
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.344
ELB improved by 0.87804
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.369
ELB improved by 0.97516
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.395
ELB improved by 0.973921
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.565
ELB improved by 0.829318
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.941
ELB improved by 0.624183
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.497
ELB improved by 0.444703
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.183
ELB improved by 0.313556
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.96
ELB improved by 0.223382
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.798
ELB improved by 0.16212
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.677
ELB improved by 0.120151
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.586
ELB improved by 0.0909451
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.516
ELB improved by 0.0702744
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.461
ELB improved by 0.0554033
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.416
ELB improved by 0.0445349
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.38
ELB improved by 0.0364735
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.349
ELB improved by 0.03042
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.323
ELB improved by 0.0258397
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.301
ELB improved by 0.0223713
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.281
ELB improved by 0.0197606
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.264
ELB improved by 0.0178147
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.247
ELB improved by 0.0163722
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.232
ELB improved by 0.0152849
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.217
ELB improved by 0.0144107
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.204
ELB improved by 0.0136155
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.191
ELB improved by 0.0127859
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.179
ELB improved by 0.0118481
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.168
ELB improved by 0.010784
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.159
ELB improved by 0.00963217
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-868.32
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-585.103
ELB improved by 283.217
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-528.12
ELB improved by 56.9833
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-488.016
ELB improved by 40.104
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.656
ELB improved by 19.36
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.367
ELB improved by 8.28886
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.642
ELB improved by 4.7257
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.966
ELB improved by 3.67529
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.572
ELB improved by 3.39446
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.22
ELB improved by 3.35229
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.888
ELB improved by 3.33166
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.688
ELB improved by 3.19963
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.791
ELB improved by 2.8969
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.343
ELB improved by 2.44883
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.424
ELB improved by 1.91859
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.03
ELB improved by 1.39365
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.05
ELB improved by 0.980717
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.336
ELB improved by 0.713281
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.784
ELB improved by 0.552753
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.33
ELB improved by 0.453215
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.942
ELB improved by 0.388021
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.598
ELB improved by 0.344765
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.281
ELB improved by 0.31628
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.983
ELB improved by 0.297876
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.697
ELB improved by 0.286786
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.415
ELB improved by 0.281484
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.134
ELB improved by 0.281155
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.849
ELB improved by 0.285334
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.555
ELB improved by 0.293627
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.249
ELB improved by 0.305549
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.929
ELB improved by 0.320405
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.592
ELB improved by 0.337218
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.237
ELB improved by 0.354773
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.865
ELB improved by 0.371802
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.478
ELB improved by 0.387232
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.078
ELB improved by 0.400413
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.666
ELB improved by 0.41123
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.246
ELB improved by 0.420062
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.819
ELB improved by 0.427611
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.384
ELB improved by 0.434693
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.942
ELB improved by 0.442114
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.491
ELB improved by 0.450816
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.029
ELB improved by 0.462532
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.547
ELB improved by 0.481531
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.028
ELB improved by 0.518614
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.432
ELB improved by 0.596664
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.698
ELB improved by 0.733956
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.84
ELB improved by 0.857438
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.987
ELB improved by 0.853044
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.219
ELB improved by 0.768777
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.559
ELB improved by 0.659783
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.025
ELB improved by 0.533676
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.617
ELB improved by 0.408211
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.312
ELB improved by 0.304765
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.08
ELB improved by 0.231758
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.893
ELB improved by 0.187156
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.728
ELB improved by 0.164776
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.572
ELB improved by 0.156281
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.421
ELB improved by 0.151588
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.279
ELB improved by 0.141628
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.157
ELB improved by 0.121624
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.064
ELB improved by 0.0932092
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411
ELB improved by 0.0645403
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.957
ELB improved by 0.0429643
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.927
ELB improved by 0.0294342
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.906
ELB improved by 0.0214871
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.889
ELB improved by 0.0167932
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.875
ELB improved by 0.0139387
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.863
ELB improved by 0.0121511
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.852
ELB improved by 0.0110074
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.842
ELB improved by 0.0102708
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.832
ELB improved by 0.00980789
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-908.615
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-603.515
ELB improved by 305.1
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-545.116
ELB improved by 58.3984
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-499.616
ELB improved by 45.4999
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.251
ELB improved by 24.3657
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.938
ELB improved by 10.3132
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.38
ELB improved by 5.55777
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.171
ELB improved by 4.20835
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.367
ELB improved by 3.8044
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.543
ELB improved by 3.82424
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.574
ELB improved by 3.9692
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.561
ELB improved by 4.0123
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.768
ELB improved by 3.79307
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.479
ELB improved by 3.28881
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.836
ELB improved by 2.64316
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.798
ELB improved by 2.03861
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.252
ELB improved by 1.5453
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.103
ELB improved by 1.14975
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.255
ELB improved by 0.847413
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.626
ELB improved by 0.629706
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.147
ELB improved by 0.478599
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.77
ELB improved by 0.377382
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.459
ELB improved by 0.310592
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.193
ELB improved by 0.265487
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.96
ELB improved by 0.233597
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.75
ELB improved by 0.210012
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.558
ELB improved by 0.191979
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.38
ELB improved by 0.177892
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.213
ELB improved by 0.16674
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.055
ELB improved by 0.157841
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.905
ELB improved by 0.150708
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.76
ELB improved by 0.144981
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.619
ELB improved by 0.14039
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.483
ELB improved by 0.136732
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.349
ELB improved by 0.133861
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.217
ELB improved by 0.131677
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.087
ELB improved by 0.130128
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.958
ELB improved by 0.129208
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.829
ELB improved by 0.128967
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.699
ELB improved by 0.129528
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.568
ELB improved by 0.131111
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.434
ELB improved by 0.134093
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.295
ELB improved by 0.139094
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.148
ELB improved by 0.147134
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.988
ELB improved by 0.159859
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.808
ELB improved by 0.179706
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.599
ELB improved by 0.20938
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.35
ELB improved by 0.248816
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.061
ELB improved by 0.288908
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.748
ELB improved by 0.312784
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.432
ELB improved by 0.316203
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.12
ELB improved by 0.312464
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.809
ELB improved by 0.310573
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.498
ELB improved by 0.310998
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.186
ELB improved by 0.312566
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.871
ELB improved by 0.314592
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.554
ELB improved by 0.316671
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.236
ELB improved by 0.318353
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.917
ELB improved by 0.318981
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.599
ELB improved by 0.317679
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.286
ELB improved by 0.313452
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.98
ELB improved by 0.305377
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.688
ELB improved by 0.292839
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.412
ELB improved by 0.275732
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.157
ELB improved by 0.254544
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.927
ELB improved by 0.23027
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.723
ELB improved by 0.204198
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.545
ELB improved by 0.17765
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.393
ELB improved by 0.151801
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.266
ELB improved by 0.127607
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.16
ELB improved by 0.105794
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.073
ELB improved by 0.0868324
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.002
ELB improved by 0.0709116
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.944
ELB improved by 0.0579582
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.897
ELB improved by 0.047711
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.857
ELB improved by 0.0398198
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.823
ELB improved by 0.0339372
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.793
ELB improved by 0.0297873
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.766
ELB improved by 0.0272256
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.739
ELB improved by 0.0263103
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.712
ELB improved by 0.0274227
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.681
ELB improved by 0.0314712
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.64
ELB improved by 0.0401282
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.585
ELB improved by 0.05556
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.507
ELB improved by 0.0778056
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.409
ELB improved by 0.0985958
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.306
ELB improved by 0.102445
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.219
ELB improved by 0.0869057
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.152
ELB improved by 0.0670445
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.099
ELB improved by 0.0534524
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.052
ELB improved by 0.0465761
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.008
ELB improved by 0.0438751
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.965
ELB improved by 0.0434382
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.92
ELB improved by 0.0444277
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.873
ELB improved by 0.0469822
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.821
ELB improved by 0.0522747
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.758
ELB improved by 0.062652
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.677
ELB improved by 0.0812063
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.569
ELB improved by 0.108387
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.436
ELB improved by 0.133331
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.301
ELB improved by 0.134311
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.193
ELB improved by 0.108141
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.116
ELB improved by 0.0775161
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.057
ELB improved by 0.0581453
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.006
ELB improved by 0.0512296
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.951
ELB improved by 0.0547689
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.883
ELB improved by 0.0684882
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.792
ELB improved by 0.0911384
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.681
ELB improved by 0.110771
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.577
ELB improved by 0.103595
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.509
ELB improved by 0.0688303
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.473
ELB improved by 0.035819
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.455
ELB improved by 0.0181258
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.444
ELB improved by 0.0105947
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.437
ELB improved by 0.00744965
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-830.813
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-568.926
ELB improved by 261.886
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-509.045
ELB improved by 59.8815
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.815
ELB improved by 39.2296
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.466
ELB improved by 18.3487
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.352
ELB improved by 9.11398
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.689
ELB improved by 6.66398
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.374
ELB improved by 6.31443
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.167
ELB improved by 6.20728
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.49
ELB improved by 5.67657
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.883
ELB improved by 4.60703
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.561
ELB improved by 3.32215
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.338
ELB improved by 2.22347
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.861
ELB improved by 1.47694
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.834
ELB improved by 1.02675
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.078
ELB improved by 0.755585
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.499
ELB improved by 0.57948
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.041
ELB improved by 0.458016
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.668
ELB improved by 0.372491
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.357
ELB improved by 0.311266
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.091
ELB improved by 0.266362
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.858
ELB improved by 0.232694
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.651
ELB improved by 0.207197
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.463
ELB improved by 0.188122
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.288
ELB improved by 0.174694
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.121
ELB improved by 0.167165
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.953
ELB improved by 0.167352
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.773
ELB improved by 0.179991
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.559
ELB improved by 0.214781
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.275
ELB improved by 0.28393
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.899
ELB improved by 0.375267
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.486
ELB improved by 0.413846
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.136
ELB improved by 0.349462
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.884
ELB improved by 0.252469
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.696
ELB improved by 0.187362
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.541
ELB improved by 0.155664
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.399
ELB improved by 0.142063
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.262
ELB improved by 0.136234
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.129
ELB improved by 0.133328
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.998
ELB improved by 0.131369
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.868
ELB improved by 0.129614
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.74
ELB improved by 0.1278
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.614
ELB improved by 0.12585
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.491
ELB improved by 0.123756
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.369
ELB improved by 0.121537
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.25
ELB improved by 0.11922
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.133
ELB improved by 0.116833
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.019
ELB improved by 0.114401
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.907
ELB improved by 0.111941
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.797
ELB improved by 0.109466
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.69
ELB improved by 0.106984
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.586
ELB improved by 0.104497
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.484
ELB improved by 0.102006
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.384
ELB improved by 0.099509
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.287
ELB improved by 0.0970051
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.193
ELB improved by 0.0944953
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.101
ELB improved by 0.0919838
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.011
ELB improved by 0.08948
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.924
ELB improved by 0.086999
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.84
ELB improved by 0.0845623
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.758
ELB improved by 0.0821975
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.678
ELB improved by 0.0799386
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.6
ELB improved by 0.0778241
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.524
ELB improved by 0.0758961
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.45
ELB improved by 0.0741991
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.377
ELB improved by 0.0727783
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.305
ELB improved by 0.0716788
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.234
ELB improved by 0.0709468
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.164
ELB improved by 0.070633
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.093
ELB improved by 0.0708025
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.021
ELB improved by 0.0715562
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.948
ELB improved by 0.0730747
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.873
ELB improved by 0.0756992
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.792
ELB improved by 0.0800661
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.705
ELB improved by 0.087267
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.606
ELB improved by 0.0987997
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.491
ELB improved by 0.115491
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.357
ELB improved by 0.134307
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.211
ELB improved by 0.145796
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.07
ELB improved by 0.140957
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.948
ELB improved by 0.122326
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.848
ELB improved by 0.0997605
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.768
ELB improved by 0.0798804
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.703
ELB improved by 0.0644216
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.651
ELB improved by 0.0528963
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.606
ELB improved by 0.0443583
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.568
ELB improved by 0.0380175
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.535
ELB improved by 0.0333554
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.505
ELB improved by 0.0300973
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.477
ELB improved by 0.0281724
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.449
ELB improved by 0.0277115
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.42
ELB improved by 0.0290967
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.387
ELB improved by 0.0330567
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.346
ELB improved by 0.0406904
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.293
ELB improved by 0.0529184
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.225
ELB improved by 0.0682185
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.146
ELB improved by 0.0792189
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.069
ELB improved by 0.0769635
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.003
ELB improved by 0.0656378
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.944
ELB improved by 0.0592748
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.882
ELB improved by 0.0622036
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.815
ELB improved by 0.0669531
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.751
ELB improved by 0.0639654
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.699
ELB improved by 0.05137
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.664
ELB improved by 0.0355385
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.641
ELB improved by 0.0224709
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.628
ELB improved by 0.0137616
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.619
ELB improved by 0.00854795
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
5.392 0.529 6.377
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.086 | 0.041 | 0.135 | |
| getPIPs | 0.076 | 0.037 | 0.125 | |
| graper | 0.126 | 0.055 | 0.202 | |
| makeExampleData | 0.018 | 0.002 | 0.021 | |
| makeExampleDataWithUnequalGroups | 0.041 | 0.004 | 0.046 | |
| plotELBO | 0.622 | 0.044 | 0.718 | |
| plotGroupPenalties | 2.643 | 0.135 | 3.034 | |
| plotPosterior | 1.589 | 0.052 | 1.789 | |
| predict.graper | 2.955 | 0.196 | 3.426 | |
| print.graper | 0.075 | 0.031 | 0.114 | |