Britta Velten
| Snapshot Date: 2026-03-08 13:45 -0400 (Sun, 08 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_22 |
| git_last_commit: 76fc31b |
| git_last_commit_date: 2025-10-29 10:49:21 -0400 (Wed, 29 Oct 2025) |
| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-03-09 11:57 -0400 (Mon, 09 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4892 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 922/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.26.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.26.0.tar.gz |
| StartedAt: 2026-03-09 00:06:01 -0400 (Mon, 09 Mar 2026) |
| EndedAt: 2026-03-09 00:07:32 -0400 (Mon, 09 Mar 2026) |
| EllapsedTime: 91.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... INFO
installed size is 6.1Mb
sub-directories of 1Mb or more:
libs 6.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.26.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.22-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.22-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.22-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.22-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-857.707
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-578.411
ELB improved by 279.296
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-518.637
ELB improved by 59.7737
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.406
ELB improved by 41.2311
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.826
ELB improved by 20.5795
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.146
ELB improved by 9.68004
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.365
ELB improved by 6.78073
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.391
ELB improved by 6.97489
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.784
ELB improved by 7.60692
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.346
ELB improved by 7.43794
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.323
ELB improved by 6.02297
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.158
ELB improved by 4.16483
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.47
ELB improved by 2.68803
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.779
ELB improved by 1.69099
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.693
ELB improved by 1.08617
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.951
ELB improved by 0.741337
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.41
ELB improved by 0.541656
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.99
ELB improved by 0.419752
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.649
ELB improved by 0.341119
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.361
ELB improved by 0.288204
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.109
ELB improved by 0.2516
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.883
ELB improved by 0.225956
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.675
ELB improved by 0.20812
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.479
ELB improved by 0.196262
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.289
ELB improved by 0.189439
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.102
ELB improved by 0.187409
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.911
ELB improved by 0.190604
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.711
ELB improved by 0.200245
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.492
ELB improved by 0.218537
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.244
ELB improved by 0.248083
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.957
ELB improved by 0.28741
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.635
ELB improved by 0.321863
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.304
ELB improved by 0.331064
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.986
ELB improved by 0.318474
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.683
ELB improved by 0.302599
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.392
ELB improved by 0.290972
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.109
ELB improved by 0.283076
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.831
ELB improved by 0.27768
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.557
ELB improved by 0.274197
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.285
ELB improved by 0.2724
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.012
ELB improved by 0.272297
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.738
ELB improved by 0.274362
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.458
ELB improved by 0.280298
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.163
ELB improved by 0.294938
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.833
ELB improved by 0.330185
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.427
ELB improved by 0.405186
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.922
ELB improved by 0.505581
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.394
ELB improved by 0.528009
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.951
ELB improved by 0.442823
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.614
ELB improved by 0.336911
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.362
ELB improved by 0.252354
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.17
ELB improved by 0.191576
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.021
ELB improved by 0.148712
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.903
ELB improved by 0.118391
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.806
ELB improved by 0.0969699
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.724
ELB improved by 0.0822485
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.651
ELB improved by 0.0732311
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.58
ELB improved by 0.0703475
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.504
ELB improved by 0.0767069
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.401
ELB improved by 0.102217
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.227
ELB improved by 0.174796
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.876
ELB improved by 0.35052
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.254
ELB improved by 0.622031
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.435
ELB improved by 0.818971
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.604
ELB improved by 0.830714
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.019
ELB improved by 0.584954
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.648
ELB improved by 0.371283
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.37
ELB improved by 0.278154
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.131
ELB improved by 0.23871
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.922
ELB improved by 0.209537
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.752
ELB improved by 0.170089
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.627
ELB improved by 0.124097
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.541
ELB improved by 0.0867047
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.477
ELB improved by 0.0639585
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.424
ELB improved by 0.0531953
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.373
ELB improved by 0.0508097
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.318
ELB improved by 0.0551225
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.252
ELB improved by 0.0658599
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.17
ELB improved by 0.0815425
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.075
ELB improved by 0.0949673
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.981
ELB improved by 0.0938964
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.906
ELB improved by 0.0753032
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.855
ELB improved by 0.0512023
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.822
ELB improved by 0.0325278
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.801
ELB improved by 0.0211792
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.786
ELB improved by 0.014945
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.775
ELB improved by 0.0115671
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.765
ELB improved by 0.00965352
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-842.157
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-547.882
ELB improved by 294.276
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.456
ELB improved by 62.4256
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.308
ELB improved by 35.1483
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.381
ELB improved by 12.9268
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.67
ELB improved by 5.71065
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.647
ELB improved by 4.02357
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.979
ELB improved by 3.66761
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.205
ELB improved by 3.7746
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.153
ELB improved by 4.05154
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.868
ELB improved by 4.28526
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.642
ELB improved by 4.22612
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.955
ELB improved by 3.68623
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.189
ELB improved by 2.76698
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.342
ELB improved by 1.84663
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.149
ELB improved by 1.19303
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.346
ELB improved by 0.803021
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.771
ELB improved by 0.575076
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.336
ELB improved by 0.435103
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.989
ELB improved by 0.346662
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.698
ELB improved by 0.290683
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.443
ELB improved by 0.254836
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.212
ELB improved by 0.2312
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.997
ELB improved by 0.215136
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.793
ELB improved by 0.204047
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.597
ELB improved by 0.196434
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.405
ELB improved by 0.191377
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.217
ELB improved by 0.188268
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.03
ELB improved by 0.186683
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.844
ELB improved by 0.186316
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.657
ELB improved by 0.186946
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.469
ELB improved by 0.18842
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.278
ELB improved by 0.190643
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.084
ELB improved by 0.193572
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.887
ELB improved by 0.197216
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.686
ELB improved by 0.201626
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.479
ELB improved by 0.206895
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.266
ELB improved by 0.213143
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.045
ELB improved by 0.220498
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.816
ELB improved by 0.22907
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.577
ELB improved by 0.238922
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.327
ELB improved by 0.250033
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.065
ELB improved by 0.262271
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.789
ELB improved by 0.275385
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.5
ELB improved by 0.289002
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.198
ELB improved by 0.302662
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.882
ELB improved by 0.315871
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.554
ELB improved by 0.328189
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.214
ELB improved by 0.339334
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.865
ELB improved by 0.349295
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.507
ELB improved by 0.358406
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.139
ELB improved by 0.367341
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.762
ELB improved by 0.377074
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.373
ELB improved by 0.389036
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.968
ELB improved by 0.405235
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.541
ELB improved by 0.427176
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.084
ELB improved by 0.457057
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.583
ELB improved by 0.500959
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.038
ELB improved by 0.544667
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.486
ELB improved by 0.552317
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.983
ELB improved by 0.503042
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.608
ELB improved by 0.374395
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.368
ELB improved by 0.240622
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.208
ELB improved by 0.16019
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.089
ELB improved by 0.118611
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.992
ELB improved by 0.0969217
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.905
ELB improved by 0.0870359
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.818
ELB improved by 0.0869371
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.722
ELB improved by 0.096021
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.612
ELB improved by 0.109544
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.498
ELB improved by 0.114595
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.397
ELB improved by 0.100448
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.323
ELB improved by 0.0742966
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.273
ELB improved by 0.0504441
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.238
ELB improved by 0.0342124
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.214
ELB improved by 0.0241933
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.196
ELB improved by 0.0180091
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.182
ELB improved by 0.0140509
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.171
ELB improved by 0.0114046
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.161
ELB improved by 0.00955837
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-873.585
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-557.483
ELB improved by 316.102
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-499.65
ELB improved by 57.8327
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.267
ELB improved by 33.3827
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.59
ELB improved by 11.6777
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.444
ELB improved by 4.14549
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.251
ELB improved by 2.19279
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.773
ELB improved by 1.47824
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.634
ELB improved by 1.13924
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.676
ELB improved by 0.958168
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.82
ELB improved by 0.856021
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.021
ELB improved by 0.798605
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.252
ELB improved by 0.768936
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.494
ELB improved by 0.758393
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.731
ELB improved by 0.763079
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.949
ELB improved by 0.781929
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.133
ELB improved by 0.815547
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.268
ELB improved by 0.865214
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.336
ELB improved by 0.931626
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.323
ELB improved by 1.01291
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.222
ELB improved by 1.10178
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.039
ELB improved by 1.18276
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.807
ELB improved by 1.23218
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.582
ELB improved by 1.22491
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.434
ELB improved by 1.14821
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.42
ELB improved by 1.01399
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.564
ELB improved by 0.855958
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.853
ELB improved by 0.710245
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.256
ELB improved by 0.596998
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.739
ELB improved by 0.517602
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.276
ELB improved by 0.463314
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.851
ELB improved by 0.424058
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.459
ELB improved by 0.392508
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.094
ELB improved by 0.364592
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.756
ELB improved by 0.338607
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.442
ELB improved by 0.314188
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.15
ELB improved by 0.291535
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.879
ELB improved by 0.270964
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.626
ELB improved by 0.252702
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.39
ELB improved by 0.236826
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.166
ELB improved by 0.223277
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.954
ELB improved by 0.211905
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.752
ELB improved by 0.202498
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.557
ELB improved by 0.19481
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.368
ELB improved by 0.188574
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.185
ELB improved by 0.183513
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.006
ELB improved by 0.179342
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.83
ELB improved by 0.175773
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.657
ELB improved by 0.172527
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.488
ELB improved by 0.169345
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.322
ELB improved by 0.166006
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.16
ELB improved by 0.16235
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.001
ELB improved by 0.158296
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.847
ELB improved by 0.153859
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.698
ELB improved by 0.149159
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.554
ELB improved by 0.144429
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.414
ELB improved by 0.140016
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.277
ELB improved by 0.136401
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.143
ELB improved by 0.134239
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.009
ELB improved by 0.134436
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.871
ELB improved by 0.138238
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.723
ELB improved by 0.147214
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.561
ELB improved by 0.162705
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.376
ELB improved by 0.184164
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.169
ELB improved by 0.207479
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.941
ELB improved by 0.228326
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.692
ELB improved by 0.248662
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.424
ELB improved by 0.268046
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.157
ELB improved by 0.266791
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.93
ELB improved by 0.226953
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.764
ELB improved by 0.166145
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.652
ELB improved by 0.11217
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.577
ELB improved by 0.0744841
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.527
ELB improved by 0.0503641
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.492
ELB improved by 0.0350464
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.467
ELB improved by 0.0250833
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.448
ELB improved by 0.0184241
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.435
ELB improved by 0.0138806
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.424
ELB improved by 0.0107333
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.415
ELB improved by 0.0085229
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-861.345
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-560.897
ELB improved by 300.447
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-503.295
ELB improved by 57.6028
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.865
ELB improved by 36.4292
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.494
ELB improved by 15.3714
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.313
ELB improved by 6.18115
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.4
ELB improved by 3.91266
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.107
ELB improved by 3.29345
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.007
ELB improved by 3.09978
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.953
ELB improved by 3.05357
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.904
ELB improved by 3.0492
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.857
ELB improved by 3.0474
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.833
ELB improved by 3.0238
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.883
ELB improved by 2.95007
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.086
ELB improved by 2.79638
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.537
ELB improved by 2.54927
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.317
ELB improved by 2.21989
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.493
ELB improved by 1.82453
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.098
ELB improved by 1.39461
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.097
ELB improved by 1.00095
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.396
ELB improved by 0.700977
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.898
ELB improved by 0.498648
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.529
ELB improved by 0.368156
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.247
ELB improved by 0.282687
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.023
ELB improved by 0.224161
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.84
ELB improved by 0.182299
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.689
ELB improved by 0.151437
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.561
ELB improved by 0.128196
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.45
ELB improved by 0.110338
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.354
ELB improved by 0.0963043
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.269
ELB improved by 0.0850146
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.193
ELB improved by 0.0757324
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.125
ELB improved by 0.0679595
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.064
ELB improved by 0.0613552
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.008
ELB improved by 0.0556805
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.958
ELB improved by 0.0507624
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.911
ELB improved by 0.0464711
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.868
ELB improved by 0.0427062
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.829
ELB improved by 0.0393885
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.793
ELB improved by 0.0364537
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.759
ELB improved by 0.0338493
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.727
ELB improved by 0.0315318
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.698
ELB improved by 0.0294647
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.67
ELB improved by 0.0276173
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.644
ELB improved by 0.0259638
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.62
ELB improved by 0.024482
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.596
ELB improved by 0.0231531
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.574
ELB improved by 0.0219613
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.554
ELB improved by 0.0208926
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.534
ELB improved by 0.0199355
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.515
ELB improved by 0.01908
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.496
ELB improved by 0.0183177
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.479
ELB improved by 0.0176415
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.462
ELB improved by 0.0170457
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.445
ELB improved by 0.0165256
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.429
ELB improved by 0.0160775
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.413
ELB improved by 0.0156989
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.398
ELB improved by 0.015388
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.383
ELB improved by 0.0151442
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.368
ELB improved by 0.0149676
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.353
ELB improved by 0.0148591
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.338
ELB improved by 0.0148204
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.323
ELB improved by 0.014854
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.308
ELB improved by 0.0149627
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.293
ELB improved by 0.0151494
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.278
ELB improved by 0.0154169
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.262
ELB improved by 0.0157673
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.246
ELB improved by 0.0162016
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.229
ELB improved by 0.0167191
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.212
ELB improved by 0.0173175
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.194
ELB improved by 0.0179926
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.175
ELB improved by 0.0187397
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.155
ELB improved by 0.0195542
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.135
ELB improved by 0.0204344
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.114
ELB improved by 0.0213829
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.091
ELB improved by 0.0224092
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.068
ELB improved by 0.0235304
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.043
ELB improved by 0.0247728
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.017
ELB improved by 0.0261712
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.989
ELB improved by 0.0277697
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.959
ELB improved by 0.0296225
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.928
ELB improved by 0.0317951
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.893
ELB improved by 0.0343673
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.856
ELB improved by 0.0374352
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.815
ELB improved by 0.0411138
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.769
ELB improved by 0.0455363
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.718
ELB improved by 0.0508484
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.661
ELB improved by 0.0571927
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.596
ELB improved by 0.0646811
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.523
ELB improved by 0.0733554
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.44
ELB improved by 0.0831484
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.346
ELB improved by 0.0938661
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.241
ELB improved by 0.105213
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.124
ELB improved by 0.116858
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.995
ELB improved by 0.128497
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.856
ELB improved by 0.139895
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.705
ELB improved by 0.150878
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.543
ELB improved by 0.161343
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.372
ELB improved by 0.171249
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.191
ELB improved by 0.180614
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.002
ELB improved by 0.189497
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.804
ELB improved by 0.197964
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.598
ELB improved by 0.20607
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.384
ELB improved by 0.213839
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.163
ELB improved by 0.221261
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.935
ELB improved by 0.228271
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.7
ELB improved by 0.234741
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.459
ELB improved by 0.240462
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.214
ELB improved by 0.245146
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.966
ELB improved by 0.248472
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.716
ELB improved by 0.250169
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.465
ELB improved by 0.2502
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.216
ELB improved by 0.24893
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.969
ELB improved by 0.247079
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.724
ELB improved by 0.245191
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.481
ELB improved by 0.242901
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.242
ELB improved by 0.238829
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.011
ELB improved by 0.231832
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.787
ELB improved by 0.223082
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.57
ELB improved by 0.21726
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.348
ELB improved by 0.222067
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.103
ELB improved by 0.245033
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.824
ELB improved by 0.279138
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.542
ELB improved by 0.282417
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.317
ELB improved by 0.225026
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.169
ELB improved by 0.147428
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.08
ELB improved by 0.0893615
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.025
ELB improved by 0.0544159
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.991
ELB improved by 0.034653
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.967
ELB improved by 0.0234435
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.95
ELB improved by 0.016867
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.938
ELB improved by 0.0128162
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.927
ELB improved by 0.0101869
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.919
ELB improved by 0.00839504
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.321 0.180 2.490
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.051 | 0.003 | 0.054 | |
| getPIPs | 0.051 | 0.000 | 0.051 | |
| graper | 0.080 | 0.004 | 0.084 | |
| makeExampleData | 0.010 | 0.001 | 0.011 | |
| makeExampleDataWithUnequalGroups | 0.012 | 0.000 | 0.012 | |
| plotELBO | 0.317 | 0.022 | 0.339 | |
| plotGroupPenalties | 1.117 | 0.051 | 1.169 | |
| plotPosterior | 0.629 | 0.011 | 0.640 | |
| predict.graper | 2.044 | 0.016 | 2.061 | |
| print.graper | 0.047 | 0.005 | 0.052 | |