Multiple platform build/check report for BioC 3.22 - CHECK results for SpectriPy on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4554
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4595
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4537
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4535
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for SpectriPy on palomino8

To the developers/maintainers of the SpectriPy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpectriPy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SpectriPy

Version: 0.99.8

Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SpectriPy.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SpectriPy_0.99.8.tar.gz

StartedAt: 2025-08-15 08:15:22 -0400 (Fri, 15 Aug 2025)

EndedAt: 2025-08-15 08:15:28 -0400 (Fri, 15 Aug 2025)

EllapsedTime: 6.6 seconds

RetCode: 1

Status: ERROR

CheckDir: SpectriPy.Rcheck

Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SpectriPy.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SpectriPy_0.99.8.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SpectriPy/DESCRIPTION' ... OK
* this is package 'SpectriPy' version '0.99.8'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SpectriPy' can be installed ... ERROR
Installation failed.
See 'F:/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  'F:/biocbuild/bbs-3.22-bioc/meat/SpectriPy.Rcheck/00check.log'
for details.

Installation output

SpectriPy.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL SpectriPy
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library'
* installing *source* package 'SpectriPy' ...
** this is package 'SpectriPy' version '0.99.8'
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Downloading fonttools (2.1MiB)
 Downloaded fonttools
Installed 40 packages in 21.35s
C:\Users\BIOCBU~1\AppData\Local\R\cache\R\RETICU~1\uv\cache\ARCHIV~1\_0ANXA~1\Lib\site-packages\pubchempy.py:563: SyntaxWarning: "is not" with 'int' literal. Did you mean "!="?
  if self.charge is not 0:
python:         C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx/Scripts/python.exe
libpython:      C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/python/cpython-3.12.9-windows-x86_64-none/python312.dll
pythonhome:     C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx
virtualenv:     C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx/Scripts/activate_this.py
version:        3.12.9 (main, Mar 17 2025, 21:06:20) [MSC v.1943 64 bit (AMD64)]
Architecture:   64bit
numpy:          C:/Users/biocbuild/AppData/Local/R/cache/R/reticulate/uv/cache/archive-v0/_0aNXaySk755D_OyXtkkx/Lib/site-packages/numpy
numpy_version:  2.2.6

NOTE: Python version was forced by py_require()
** testing if installed package can be loaded from final location

CHECK results for SpectriPy on palomino8

Summary

Command output

Installation output

Tests output

Example timings