Multiple platform build/check report for BioC 3.16 - CHECK results for graper on palomino4

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.5 LTS)	x86_64	4.2.3 (2023-03-15) -- "Shortstop Beagle"	4502
palomino4	Windows Server 2022 Datacenter	x64	4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle"	4282
lconway	macOS 12.5.1 Monterey	x86_64	4.2.3 (2023-03-15) -- "Shortstop Beagle"	4310
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: graper

Version: 1.14.2

Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings graper_1.14.2.tar.gz

StartedAt: 2023-04-11 02:06:58 -0400 (Tue, 11 Apr 2023)

EndedAt: 2023-04-11 02:08:22 -0400 (Tue, 11 Apr 2023)

EllapsedTime: 83.7 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

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###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings graper_1.14.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/graper.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'graper/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'graper' version '1.14.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'graper' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.16-bioc/R/library/graper/libs/x64/graper.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'F:/biocbuild/bbs-3.16-bioc/meat/graper.Rcheck/00check.log'
for details.

##############################################################################
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###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
* installing *source* package 'graper' ...
** using staged installation
** libs
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fit_graper.cpp -o fit_graper.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/lexical_cast.hpp:30,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/math/tools/convert_from_string.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/math/constants/constants.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/math/special_functions/digamma.hpp:20,
                 from graper_linear_dense_ff.h:2,
                 from fit_graper.cpp:4:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
g++ -shared -s -static-libgcc -o graper.dll tmp.def RcppExports.o fit_graper.o -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-graper/00new/graper/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R version 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-872.993
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-595.559
ELB improved by 277.435

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-536.638
ELB improved by 58.9208

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.075
ELB improved by 43.5632

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.164
ELB improved by 22.9109

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.6
ELB improved by 10.5637

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.81
ELB improved by 6.78989

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.454
ELB improved by 6.35577

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.584
ELB improved by 6.8708

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.202
ELB improved by 7.38196

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.148
ELB improved by 7.05349

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.481
ELB improved by 5.66707

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.562
ELB improved by 3.91922

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.974
ELB improved by 2.5878

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.221
ELB improved by 1.75311

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.996
ELB improved by 1.22465

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.1
ELB improved by 0.895838

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.411
ELB improved by 0.689276

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.863
ELB improved by 0.548287

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.42
ELB improved by 0.443132

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.058
ELB improved by 0.361576

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.759
ELB improved by 0.29915

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.506
ELB improved by 0.252855

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.287
ELB improved by 0.21911

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.093
ELB improved by 0.194343

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.917
ELB improved by 0.175752

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.756
ELB improved by 0.161429

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.605
ELB improved by 0.150139

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.464
ELB improved by 0.141075

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.331
ELB improved by 0.133689

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.203
ELB improved by 0.127601

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.081
ELB improved by 0.122536

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.962
ELB improved by 0.1183

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.847
ELB improved by 0.114754

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.736
ELB improved by 0.111803

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.626
ELB improved by 0.109383

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.519
ELB improved by 0.107457

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.413
ELB improved by 0.106005

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.308
ELB improved by 0.105024

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.203
ELB improved by 0.104523

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.099
ELB improved by 0.104522

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.994
ELB improved by 0.105051

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.888
ELB improved by 0.106148

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.78
ELB improved by 0.107859

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.669
ELB improved by 0.110231

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.556
ELB improved by 0.113313

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.439
ELB improved by 0.117152

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.317
ELB improved by 0.121788

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.19
ELB improved by 0.127262

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.056
ELB improved by 0.133624

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.915
ELB improved by 0.140956

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.766
ELB improved by 0.149442

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.606
ELB improved by 0.159498

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.434
ELB improved by 0.17209

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.245
ELB improved by 0.189425

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.029
ELB improved by 0.2164

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.766
ELB improved by 0.262781

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.425
ELB improved by 0.340933

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.985
ELB improved by 0.440271

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.483
ELB improved by 0.501562

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.981
ELB improved by 0.501954

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.489
ELB improved by 0.491856

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.999
ELB improved by 0.490581

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.545
ELB improved by 0.453381

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.188
ELB improved by 0.35746

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.931
ELB improved by 0.256563

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.748
ELB improved by 0.183352

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.613
ELB improved by 0.134625

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.511
ELB improved by 0.102096

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.432
ELB improved by 0.0795195

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.369
ELB improved by 0.0629077

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.319
ELB improved by 0.0501814

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.278
ELB improved by 0.0404396

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.245
ELB improved by 0.0332361

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.217
ELB improved by 0.0281904

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.192
ELB improved by 0.024917

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.169
ELB improved by 0.0230842

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.146
ELB improved by 0.02247

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.123
ELB improved by 0.0229717

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.099
ELB improved by 0.0245642

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.071
ELB improved by 0.0271829

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.041
ELB improved by 0.0304999

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.007
ELB improved by 0.033635

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.972
ELB improved by 0.0351166

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.939
ELB improved by 0.0335804

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.91
ELB improved by 0.0289638

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.887
ELB improved by 0.02277

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.87
ELB improved by 0.0168558

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.858
ELB improved by 0.012251

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.849
ELB improved by 0.00907443

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-853.165
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-597.949
ELB improved by 255.215

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-538.765
ELB improved by 59.1837

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.77
ELB improved by 44.9957

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.124
ELB improved by 21.6462

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.486
ELB improved by 8.63758

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.792
ELB improved by 5.69443

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.266
ELB improved by 5.52566

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.073
ELB improved by 6.19281

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.18
ELB improved by 6.89268

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.434
ELB improved by 6.7467

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.05
ELB improved by 5.38369

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.461
ELB improved by 3.5889

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.239
ELB improved by 2.22171

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.823
ELB improved by 1.41635

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.844
ELB improved by 0.978613

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.104
ELB improved by 0.740485

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.497
ELB improved by 0.606781

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.969
ELB improved by 0.528392

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.488
ELB improved by 0.480962

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.035
ELB improved by 0.452799

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.597
ELB improved by 0.438336

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.162
ELB improved by 0.43481

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.721
ELB improved by 0.44081

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.265
ELB improved by 0.455791

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.785
ELB improved by 0.479955

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.271
ELB improved by 0.51428

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.71
ELB improved by 0.560628

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.088
ELB improved by 0.621941

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.386
ELB improved by 0.70231

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.581
ELB improved by 0.805305

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.655
ELB improved by 0.925391

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.624
ELB improved by 1.03161

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.544
ELB improved by 1.07965

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.481
ELB improved by 1.06318

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.471
ELB improved by 1.01045

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.514
ELB improved by 0.956208

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.574
ELB improved by 0.940445

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.592
ELB improved by 0.982262

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.543
ELB improved by 1.04893

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.398
ELB improved by 1.14502

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.174
ELB improved by 1.22376

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.222
ELB improved by 0.952064

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.63
ELB improved by 0.592175

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.214
ELB improved by 0.415232

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.867
ELB improved by 0.347609

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.522
ELB improved by 0.345261

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.113
ELB improved by 0.408151

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.588
ELB improved by 0.525015

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.026
ELB improved by 0.562758

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.637
ELB improved by 0.388265

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.449
ELB improved by 0.188158

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.364
ELB improved by 0.0849604

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.321
ELB improved by 0.0433882

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.294
ELB improved by 0.0270368

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.274
ELB improved by 0.0200199

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.257
ELB improved by 0.0164394

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.243
ELB improved by 0.0142095

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.231
ELB improved by 0.01259

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.219
ELB improved by 0.0113025

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.209
ELB improved by 0.0102288

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.2
ELB improved by 0.00931037

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-854.603
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-576.711
ELB improved by 277.892

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-512.983
ELB improved by 63.7277

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.805
ELB improved by 40.178

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.588
ELB improved by 16.2167

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.525
ELB improved by 7.06373

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.665
ELB improved by 4.85999

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.191
ELB improved by 4.47348

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.562
ELB improved by 4.62929

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.685
ELB improved by 4.87655

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.795
ELB improved by 4.88999

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.378
ELB improved by 4.41679

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.888
ELB improved by 3.49043

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.433
ELB improved by 2.45484

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.829
ELB improved by 1.60396

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.807
ELB improved by 1.02206

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.14
ELB improved by 0.667379

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.682
ELB improved by 0.45817

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.348
ELB improved by 0.333897

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.089
ELB improved by 0.258931

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.877
ELB improved by 0.211999

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.696
ELB improved by 0.180804

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.537
ELB improved by 0.158636

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.395
ELB improved by 0.141932

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.267
ELB improved by 0.128797

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.148
ELB improved by 0.118194

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.039
ELB improved by 0.109538

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.936
ELB improved by 0.102473

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.84
ELB improved by 0.096759

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.747
ELB improved by 0.0922171

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.659
ELB improved by 0.0887001

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.573
ELB improved by 0.0860852

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.488
ELB improved by 0.0842694

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.405
ELB improved by 0.0831687

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.322
ELB improved by 0.0827153

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.24
ELB improved by 0.0828562

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.156
ELB improved by 0.0835506

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.071
ELB improved by 0.0847677

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.985
ELB improved by 0.0864856

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.896
ELB improved by 0.08869

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.805
ELB improved by 0.0913733

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.71
ELB improved by 0.0945343

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.612
ELB improved by 0.098178

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.51
ELB improved by 0.102315

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.403
ELB improved by 0.106963

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.291
ELB improved by 0.112143

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.173
ELB improved by 0.117881

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.049
ELB improved by 0.124206

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.917
ELB improved by 0.131143

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.779
ELB improved by 0.138711

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.632
ELB improved by 0.146918

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.476
ELB improved by 0.155746

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.311
ELB improved by 0.16514

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.136
ELB improved by 0.174997

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.951
ELB improved by 0.185148

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.755
ELB improved by 0.195346

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.55
ELB improved by 0.205261

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.336
ELB improved by 0.214498

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.113
ELB improved by 0.222633

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.884
ELB improved by 0.229304

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.649
ELB improved by 0.234357

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.411
ELB improved by 0.238065

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.17
ELB improved by 0.241494

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.923
ELB improved by 0.247165

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.662
ELB improved by 0.260473

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.369
ELB improved by 0.292834

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.003
ELB improved by 0.36647

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.497
ELB improved by 0.505388

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.837
ELB improved by 0.660451

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.158
ELB improved by 0.678861

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.605
ELB improved by 0.55359

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.2
ELB improved by 0.404414

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.91
ELB improved by 0.290589

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.691
ELB improved by 0.218692

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.512
ELB improved by 0.178685

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.351
ELB improved by 0.161304

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.188
ELB improved by 0.162653

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.005
ELB improved by 0.182884

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.788
ELB improved by 0.217162

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.546
ELB improved by 0.241855

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.309
ELB improved by 0.237112

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.09
ELB improved by 0.219327

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.896
ELB improved by 0.193355

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.742
ELB improved by 0.154475

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.622
ELB improved by 0.119834

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.523
ELB improved by 0.0991692

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.438
ELB improved by 0.0846337

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.371
ELB improved by 0.0676835

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.322
ELB improved by 0.0485041

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.29
ELB improved by 0.0321204

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.269
ELB improved by 0.021083

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.254
ELB improved by 0.0145655

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.244
ELB improved by 0.0108497

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.235
ELB improved by 0.00866518

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-875.787
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-559.766
ELB improved by 316.022

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-503.207
ELB improved by 56.5581

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.184
ELB improved by 33.0239

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.489
ELB improved by 15.6946

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.859
ELB improved by 7.6301

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.116
ELB improved by 5.743

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.291
ELB improved by 5.8246

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.849
ELB improved by 6.44223

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.934
ELB improved by 6.91495

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.35
ELB improved by 6.58355

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.003
ELB improved by 5.34718

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.025
ELB improved by 3.97851

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.974
ELB improved by 3.05043

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.676
ELB improved by 2.29801

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.091
ELB improved by 1.58553

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.972
ELB improved by 1.11878

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.105
ELB improved by 0.867508

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.364
ELB improved by 0.740973

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.682
ELB improved by 0.68119

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.024
ELB improved by 0.65832

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.367
ELB improved by 0.657543

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.695
ELB improved by 0.671396

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.999
ELB improved by 0.696326

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.268
ELB improved by 0.731229

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.491
ELB improved by 0.776609

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.657
ELB improved by 0.833593

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.755
ELB improved by 0.902408

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.775
ELB improved by 0.980174

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.717
ELB improved by 1.05829

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.596
ELB improved by 1.12056

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.451
ELB improved by 1.14468

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.342
ELB improved by 1.10957

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.334
ELB improved by 1.00755

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.481
ELB improved by 0.852714

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.805
ELB improved by 0.676293

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.295
ELB improved by 0.510435

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.92
ELB improved by 0.374354

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.648
ELB improved by 0.272231

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.449
ELB improved by 0.199284

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.301
ELB improved by 0.148182

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.188
ELB improved by 0.112397

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.101
ELB improved by 0.0870926

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.032
ELB improved by 0.0689335

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.977
ELB improved by 0.0556776

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.931
ELB improved by 0.0458212

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.892
ELB improved by 0.0383512

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.86
ELB improved by 0.0325802

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.832
ELB improved by 0.0280376

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.807
ELB improved by 0.0243983

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.786
ELB improved by 0.021435

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.767
ELB improved by 0.0189866

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.75
ELB improved by 0.0169371

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.735
ELB improved by 0.0152021

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.721
ELB improved by 0.0137187

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.709
ELB improved by 0.0124395

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.697
ELB improved by 0.0113283

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.687
ELB improved by 0.0103567

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.677
ELB improved by 0.00950222

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
   2.56    0.20    2.73

name	user	system	elapsed
coef.graper	0.05	0.01	0.07
getPIPs	0.05	0.00	0.04
graper	0.08	0.00	0.08
makeExampleData	0.01	0.00	0.01
makeExampleDataWithUnequalGroups	0.02	0.00	0.02
plotELBO	0.28	0.00	0.28
plotGroupPenalties	0.83	0.03	0.86
plotPosterior	0.56	0.02	0.58
predict.graper	1.60	0.04	1.64
print.graper	0.04	0.00	0.04

CHECK results for graper on palomino4

Summary

Command output

Installation output

Tests output

Example timings