| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:06:10 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the graper package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 854/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.14.2 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: graper |
| Version: 1.14.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.14.2.tar.gz |
| StartedAt: 2023-04-10 20:31:56 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 20:32:56 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 60.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.14.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/graper.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘graper/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘graper’ version ‘1.14.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘graper’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.16-bioc/meat/graper.Rcheck/00check.log’ for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘graper’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: dylib (/usr/local/gfortran/lib/libgfortran.dylib) was built for newer macOS version (10.14) than being linked (10.13) ld: warning: dylib (/usr/local/gfortran/lib/libquadmath.dylib) was built for newer macOS version (10.14) than being linked (10.13) installing to /Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-858.051
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-586.243
ELB improved by 271.809
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-523.878
ELB improved by 62.3647
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.009
ELB improved by 42.8687
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.275
ELB improved by 18.7341
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.183
ELB improved by 7.09249
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.39
ELB improved by 3.79265
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.667
ELB improved by 2.72341
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.335
ELB improved by 2.33177
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.201
ELB improved by 2.13367
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.225
ELB improved by 1.97629
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.418
ELB improved by 1.80634
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.808
ELB improved by 1.61043
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.413
ELB improved by 1.39461
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.239
ELB improved by 1.17411
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.273
ELB improved by 0.966015
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.49
ELB improved by 0.783537
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.857
ELB improved by 0.633138
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.342
ELB improved by 0.514836
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.917
ELB improved by 0.424338
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.562
ELB improved by 0.355457
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.26
ELB improved by 0.302098
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432
ELB improved by 0.259491
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.776
ELB improved by 0.224483
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.581
ELB improved by 0.195178
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.41
ELB improved by 0.170434
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.261
ELB improved by 0.149504
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.129
ELB improved by 0.131827
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.012
ELB improved by 0.116937
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.908
ELB improved by 0.104418
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.814
ELB improved by 0.0938949
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.729
ELB improved by 0.0850335
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.651
ELB improved by 0.0775471
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.58
ELB improved by 0.0711961
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.514
ELB improved by 0.0657845
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.453
ELB improved by 0.0611546
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.396
ELB improved by 0.0571803
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.342
ELB improved by 0.0537611
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.291
ELB improved by 0.0508164
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.243
ELB improved by 0.0482811
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.197
ELB improved by 0.0461026
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.153
ELB improved by 0.0442379
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.11
ELB improved by 0.0426515
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.069
ELB improved by 0.0413142
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.029
ELB improved by 0.0402018
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.989
ELB improved by 0.0392941
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.951
ELB improved by 0.0385747
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.913
ELB improved by 0.0380297
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.875
ELB improved by 0.0376482
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.838
ELB improved by 0.0374212
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.8
ELB improved by 0.0373421
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.763
ELB improved by 0.0374058
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.725
ELB improved by 0.037609
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.687
ELB improved by 0.0379501
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.649
ELB improved by 0.0384292
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.61
ELB improved by 0.0390479
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.57
ELB improved by 0.0398095
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.529
ELB improved by 0.0407187
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.487
ELB improved by 0.0417825
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.444
ELB improved by 0.0430093
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.4
ELB improved by 0.0444096
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.354
ELB improved by 0.0459961
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.306
ELB improved by 0.0477835
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.256
ELB improved by 0.0497891
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.204
ELB improved by 0.0520321
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.15
ELB improved by 0.0545342
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.093
ELB improved by 0.0573194
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.032
ELB improved by 0.0604131
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.968
ELB improved by 0.0638425
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.901
ELB improved by 0.067635
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.829
ELB improved by 0.0718174
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.752
ELB improved by 0.0764144
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.671
ELB improved by 0.0814459
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.584
ELB improved by 0.0869246
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.491
ELB improved by 0.0928522
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.392
ELB improved by 0.0992154
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.286
ELB improved by 0.105981
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.173
ELB improved by 0.113089
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.052
ELB improved by 0.120452
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.925
ELB improved by 0.127946
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.789
ELB improved by 0.135415
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.646
ELB improved by 0.142666
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.497
ELB improved by 0.14948
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.341
ELB improved by 0.155618
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.181
ELB improved by 0.160828
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.016
ELB improved by 0.16485
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.848
ELB improved by 0.167407
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.68
ELB improved by 0.168205
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.513
ELB improved by 0.166946
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.35
ELB improved by 0.163393
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.192
ELB improved by 0.157491
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.043
ELB improved by 0.149487
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.903
ELB improved by 0.139973
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.773
ELB improved by 0.129789
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.653
ELB improved by 0.119877
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.542
ELB improved by 0.111169
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.437
ELB improved by 0.10457
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.336
ELB improved by 0.10101
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.235
ELB improved by 0.101409
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.129
ELB improved by 0.106293
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.014
ELB improved by 0.114678
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.891
ELB improved by 0.122594
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.768
ELB improved by 0.123839
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.653
ELB improved by 0.114877
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.554
ELB improved by 0.0983299
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.475
ELB improved by 0.0797425
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.412
ELB improved by 0.0630845
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.362
ELB improved by 0.0497904
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.322
ELB improved by 0.0397486
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.29
ELB improved by 0.0322856
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.263
ELB improved by 0.0266932
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.241
ELB improved by 0.022412
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.222
ELB improved by 0.0190511
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.205
ELB improved by 0.0163511
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.191
ELB improved by 0.0141425
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.179
ELB improved by 0.0123122
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.168
ELB improved by 0.010782
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.158
ELB improved by 0.00949518
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-811.446
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-588.338
ELB improved by 223.107
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-527.863
ELB improved by 60.4755
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.668
ELB improved by 53.1954
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.173
ELB improved by 33.4946
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.072
ELB improved by 14.1005
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.88
ELB improved by 6.1924
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.924
ELB improved by 3.95588
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.836
ELB improved by 3.08768
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.101
ELB improved by 2.73588
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.45
ELB improved by 2.65063
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.719
ELB improved by 2.73144
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.775
ELB improved by 2.9438
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.502
ELB improved by 3.27255
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.829
ELB improved by 3.67337
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.813
ELB improved by 4.01554
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.748
ELB improved by 4.06504
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.096
ELB improved by 3.65249
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.171
ELB improved by 2.92494
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.937
ELB improved by 2.23335
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.176
ELB improved by 1.76118
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.744
ELB improved by 1.43269
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.524
ELB improved by 1.21971
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.367
ELB improved by 1.15735
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.174
ELB improved by 1.19237
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.919
ELB improved by 1.25484
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-369.592
ELB improved by 1.32755
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-368.171
ELB improved by 1.42092
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-366.631
ELB improved by 1.53993
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-364.937
ELB improved by 1.69351
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-363.019
ELB improved by 1.91842
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.695
ELB improved by 2.32428
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-357.675
ELB improved by 3.01989
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-353.911
ELB improved by 3.76423
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-350.238
ELB improved by 3.67227
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-347.839
ELB improved by 2.39933
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-346.524
ELB improved by 1.31513
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-345.832
ELB improved by 0.691733
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-345.454
ELB improved by 0.377864
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-345.23
ELB improved by 0.22422
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-345.085
ELB improved by 0.144983
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.985
ELB improved by 0.0999757
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.913
ELB improved by 0.0718776
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.86
ELB improved by 0.053197
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.82
ELB improved by 0.0403515
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.788
ELB improved by 0.0313376
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.763
ELB improved by 0.024898
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.743
ELB improved by 0.0202076
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.727
ELB improved by 0.01672
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.712
ELB improved by 0.0140728
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.7
ELB improved by 0.0120239
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.69
ELB improved by 0.0104095
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-344.681
ELB improved by 0.00911679
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-880.574
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-596.524
ELB improved by 284.05
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-532.903
ELB improved by 63.6215
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-488.214
ELB improved by 44.6881
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.131
ELB improved by 21.0834
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.82
ELB improved by 8.3108
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.161
ELB improved by 4.65942
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.347
ELB improved by 3.81427
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.682
ELB improved by 3.6642
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.956
ELB improved by 3.72586
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.102
ELB improved by 3.85494
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.161
ELB improved by 3.94023
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.334
ELB improved by 3.82727
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.943
ELB improved by 3.39097
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.254
ELB improved by 2.68905
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.311
ELB improved by 1.94268
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.976
ELB improved by 1.33512
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.059
ELB improved by 0.917003
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.404
ELB improved by 0.654753
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.91
ELB improved by 0.493954
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.519
ELB improved by 0.391905
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.196
ELB improved by 0.323009
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.922
ELB improved by 0.273508
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.686
ELB improved by 0.236122
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.479
ELB improved by 0.206832
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.296
ELB improved by 0.183214
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.132
ELB improved by 0.163633
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.985
ELB improved by 0.146861
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.853
ELB improved by 0.13195
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.735
ELB improved by 0.118242
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.63
ELB improved by 0.105438
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.536
ELB improved by 0.0935799
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.453
ELB improved by 0.0829038
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.38
ELB improved by 0.0736229
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.314
ELB improved by 0.0657905
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.255
ELB improved by 0.059291
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.201
ELB improved by 0.053913
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.151
ELB improved by 0.0494287
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.106
ELB improved by 0.0456404
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.063
ELB improved by 0.0423953
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.024
ELB improved by 0.0395815
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.987
ELB improved by 0.0371183
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.952
ELB improved by 0.0349468
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.919
ELB improved by 0.0330227
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.887
ELB improved by 0.0313115
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.857
ELB improved by 0.0297854
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.829
ELB improved by 0.0284215
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.802
ELB improved by 0.0272005
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.776
ELB improved by 0.0261055
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.751
ELB improved by 0.0251222
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.726
ELB improved by 0.024238
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.703
ELB improved by 0.0234415
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.68
ELB improved by 0.0227229
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.658
ELB improved by 0.0220735
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.637
ELB improved by 0.0214851
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.616
ELB improved by 0.0209508
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.595
ELB improved by 0.0204641
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.575
ELB improved by 0.0200193
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.556
ELB improved by 0.019611
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.536
ELB improved by 0.0192346
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.517
ELB improved by 0.0188857
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.499
ELB improved by 0.0185605
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.481
ELB improved by 0.0182553
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.463
ELB improved by 0.017967
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.445
ELB improved by 0.0176927
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.428
ELB improved by 0.01743
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.41
ELB improved by 0.0171765
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.393
ELB improved by 0.0169303
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.377
ELB improved by 0.0166897
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.36
ELB improved by 0.0164533
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.344
ELB improved by 0.01622
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.328
ELB improved by 0.0159887
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.312
ELB improved by 0.0157588
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.297
ELB improved by 0.01553
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.282
ELB improved by 0.0153017
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.266
ELB improved by 0.0150742
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.252
ELB improved by 0.0148473
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.237
ELB improved by 0.0146214
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.223
ELB improved by 0.0143969
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.208
ELB improved by 0.0141742
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.194
ELB improved by 0.013954
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.181
ELB improved by 0.013737
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.167
ELB improved by 0.0135237
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.154
ELB improved by 0.013315
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.141
ELB improved by 0.0131116
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.128
ELB improved by 0.0129142
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.115
ELB improved by 0.0127235
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.103
ELB improved by 0.0125403
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.09
ELB improved by 0.0123651
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.078
ELB improved by 0.0121984
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.066
ELB improved by 0.0120408
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.054
ELB improved by 0.0118928
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.042
ELB improved by 0.0117546
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.031
ELB improved by 0.0116266
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.019
ELB improved by 0.011509
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.008
ELB improved by 0.0114021
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.996
ELB improved by 0.0113058
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.985
ELB improved by 0.0112203
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.974
ELB improved by 0.0111456
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.963
ELB improved by 0.0110816
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.952
ELB improved by 0.0110283
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.941
ELB improved by 0.0109856
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.93
ELB improved by 0.0109533
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.919
ELB improved by 0.0109314
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.908
ELB improved by 0.0109196
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.897
ELB improved by 0.0109178
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.886
ELB improved by 0.0109258
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.875
ELB improved by 0.0109433
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.864
ELB improved by 0.0109702
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.853
ELB improved by 0.0110061
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.842
ELB improved by 0.011051
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.831
ELB improved by 0.0111044
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.82
ELB improved by 0.0111661
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.809
ELB improved by 0.0112359
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.798
ELB improved by 0.0113133
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.786
ELB improved by 0.0113981
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.775
ELB improved by 0.0114899
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.763
ELB improved by 0.0115881
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.751
ELB improved by 0.0116924
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.74
ELB improved by 0.0118021
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.728
ELB improved by 0.0119168
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.716
ELB improved by 0.0120356
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.704
ELB improved by 0.012158
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.691
ELB improved by 0.0122829
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.679
ELB improved by 0.0124095
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.666
ELB improved by 0.0125368
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.654
ELB improved by 0.0126635
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.641
ELB improved by 0.0127885
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.628
ELB improved by 0.0129103
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.615
ELB improved by 0.0130276
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.602
ELB improved by 0.0131386
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.589
ELB improved by 0.0132417
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.575
ELB improved by 0.0133353
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.562
ELB improved by 0.0134174
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.548
ELB improved by 0.0134862
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.535
ELB improved by 0.0135399
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.521
ELB improved by 0.0135768
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.508
ELB improved by 0.0135951
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.494
ELB improved by 0.0135934
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.48
ELB improved by 0.0135703
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.467
ELB improved by 0.0135247
iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.453
ELB improved by 0.0134561
iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.44
ELB improved by 0.013364
iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.427
ELB improved by 0.0132487
iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.414
ELB improved by 0.013111
iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.401
ELB improved by 0.0129519
iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.388
ELB improved by 0.0127736
iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.375
ELB improved by 0.0125786
iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.363
ELB improved by 0.0123702
iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.351
ELB improved by 0.0121526
iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.339
ELB improved by 0.011931
iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.327
ELB improved by 0.0117114
iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.316
ELB improved by 0.0115013
iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.304
ELB improved by 0.0113097
iteration 155
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.293
ELB improved by 0.0111478
iteration 156
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.282
ELB improved by 0.0110299
iteration 157
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.271
ELB improved by 0.0109745
iteration 158
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.26
ELB improved by 0.0110069
iteration 159
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.249
ELB improved by 0.0111623
iteration 160
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.238
ELB improved by 0.011492
iteration 161
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.226
ELB improved by 0.0120731
iteration 162
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.212
ELB improved by 0.0130259
iteration 163
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.198
ELB improved by 0.0145444
iteration 164
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.181
ELB improved by 0.0169524
iteration 165
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.16
ELB improved by 0.0208066
iteration 166
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.133
ELB improved by 0.0270887
iteration 167
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.096
ELB improved by 0.0375445
iteration 168
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.04
ELB improved by 0.0551826
iteration 169
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.956
ELB improved by 0.0844826
iteration 170
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.827
ELB improved by 0.129046
iteration 171
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.644
ELB improved by 0.182497
iteration 172
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.423
ELB improved by 0.221228
iteration 173
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.195
ELB improved by 0.228132
iteration 174
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.978
ELB improved by 0.217135
iteration 175
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.768
ELB improved by 0.209487
iteration 176
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.554
ELB improved by 0.214072
iteration 177
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.326
ELB improved by 0.228011
iteration 178
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.09
ELB improved by 0.235845
iteration 179
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.871
ELB improved by 0.219422
iteration 180
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.687
ELB improved by 0.184199
iteration 181
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.532
ELB improved by 0.154386
iteration 182
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.386
ELB improved by 0.146028
iteration 183
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.222
ELB improved by 0.16467
iteration 184
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.017
ELB improved by 0.204591
iteration 185
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.784
ELB improved by 0.232711
iteration 186
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.573
ELB improved by 0.211061
iteration 187
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.419
ELB improved by 0.154458
iteration 188
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.318
ELB improved by 0.101206
iteration 189
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.252
ELB improved by 0.0655142
iteration 190
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.208
ELB improved by 0.0442575
iteration 191
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.176
ELB improved by 0.0317762
iteration 192
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.152
ELB improved by 0.0243174
iteration 193
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.132
ELB improved by 0.0198811
iteration 194
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.114
ELB improved by 0.0174794
iteration 195
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.098
ELB improved by 0.0166758
iteration 196
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.08
ELB improved by 0.017365
iteration 197
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.061
ELB improved by 0.0196675
iteration 198
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.037
ELB improved by 0.0238273
iteration 199
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.007
ELB improved by 0.0299831
iteration 200
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.969
ELB improved by 0.0376821
iteration 201
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.924
ELB improved by 0.0452422
iteration 202
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.874
ELB improved by 0.0497424
iteration 203
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.826
ELB improved by 0.0485945
iteration 204
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.784
ELB improved by 0.0417461
iteration 205
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.752
ELB improved by 0.0318429
iteration 206
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.73
ELB improved by 0.0220997
iteration 207
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.716
ELB improved by 0.0144231
iteration 208
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.706
ELB improved by 0.00918088
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-859.667
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-574.677
ELB improved by 284.99
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-514.153
ELB improved by 60.524
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.064
ELB improved by 44.0888
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.344
ELB improved by 19.7196
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.123
ELB improved by 7.2213
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.134
ELB improved by 3.98936
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.1
ELB improved by 3.03414
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.441
ELB improved by 2.65902
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.965
ELB improved by 2.47537
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.618
ELB improved by 2.34764
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.386
ELB improved by 2.23162
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.273
ELB improved by 2.11334
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.286
ELB improved by 1.98607
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.442
ELB improved by 1.84407
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.76
ELB improved by 1.68263
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.26
ELB improved by 1.49945
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.963
ELB improved by 1.29682
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.879
ELB improved by 1.0844
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414
ELB improved by 0.878646
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.304
ELB improved by 0.696762
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.754
ELB improved by 0.549714
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.314
ELB improved by 0.439564
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.953
ELB improved by 0.361701
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.644
ELB improved by 0.308817
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.37
ELB improved by 0.273879
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.119
ELB improved by 0.251389
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.881
ELB improved by 0.237491
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.652
ELB improved by 0.229571
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.426
ELB improved by 0.225784
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.201
ELB improved by 0.22468
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.976
ELB improved by 0.225017
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.75
ELB improved by 0.225754
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.524
ELB improved by 0.226164
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.298
ELB improved by 0.225935
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.073
ELB improved by 0.225189
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.849
ELB improved by 0.224437
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.624
ELB improved by 0.224573
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.397
ELB improved by 0.226952
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.164
ELB improved by 0.233515
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.917
ELB improved by 0.246789
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.647
ELB improved by 0.269269
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.346
ELB improved by 0.301399
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.007
ELB improved by 0.33904
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.631
ELB improved by 0.375738
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.22
ELB improved by 0.411246
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.767
ELB improved by 0.452928
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.26
ELB improved by 0.506651
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.688
ELB improved by 0.572244
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.041
ELB improved by 0.647428
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.309
ELB improved by 0.731776
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.483
ELB improved by 0.825601
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.556
ELB improved by 0.927285
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.524
ELB improved by 1.03202
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.393
ELB improved by 1.13143
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.178
ELB improved by 1.21503
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.904
ELB improved by 1.27379
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.596
ELB improved by 1.30766
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.254
ELB improved by 1.34217
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.92
ELB improved by 1.33394
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.8
ELB improved by 1.12037
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.991
ELB improved by 0.808375
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.433
ELB improved by 0.558032
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.065
ELB improved by 0.368714
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.833
ELB improved by 0.231393
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.689
ELB improved by 0.144186
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.596
ELB improved by 0.0932398
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.532
ELB improved by 0.063726
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.486
ELB improved by 0.0460017
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.451
ELB improved by 0.034778
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.424
ELB improved by 0.0272885
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.402
ELB improved by 0.0220649
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.384
ELB improved by 0.0182904
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.368
ELB improved by 0.0154839
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.355
ELB improved by 0.0133465
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.343
ELB improved by 0.0116843
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.333
ELB improved by 0.0103673
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.323
ELB improved by 0.00930582
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.251 0.223 2.475
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.043 | 0.012 | 0.055 | |
| getPIPs | 0.04 | 0.01 | 0.05 | |
| graper | 0.066 | 0.014 | 0.079 | |
| makeExampleData | 0.008 | 0.001 | 0.009 | |
| makeExampleDataWithUnequalGroups | 0.009 | 0.002 | 0.010 | |
| plotELBO | 0.213 | 0.023 | 0.238 | |
| plotGroupPenalties | 0.740 | 0.035 | 0.778 | |
| plotPosterior | 0.431 | 0.019 | 0.452 | |
| predict.graper | 1.631 | 0.076 | 1.749 | |
| print.graper | 0.045 | 0.015 | 0.060 | |