Ana Galhoz
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/wppi |
| git_branch: RELEASE_3_14 |
| git_last_commit: 18c6e65 |
| git_last_commit_date: 2021-10-26 13:08:36 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:34 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the wppi package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wppi.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2067/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| wppi 1.2.0 (landing page) Ana Galhoz
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: wppi |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:wppi.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings wppi_1.2.0.tar.gz |
| StartedAt: 2022-04-13 04:49:11 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 04:55:47 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 396.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: wppi.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:wppi.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings wppi_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/wppi.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'wppi/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'wppi' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'wppi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
[2022-04-13 04:50:13] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-13 04:50:13] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-13 04:50:13] [TRACE] [OmnipathR] Cache locked: FALSE
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
wppi 41.84 0.25 42.09
score_candidate_genes_from_PPI 21.83 0.17 22.01
random_walk 19.26 0.12 19.39
prioritization_genes 18.30 0.13 18.42
weighted_adj 15.33 0.20 15.54
wppi_data 5.10 0.05 5.14
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
wppi 40.47 0.17 40.66
random_walk 19.94 0.08 20.02
score_candidate_genes_from_PPI 19.89 0.11 20.00
prioritization_genes 19.74 0.25 19.99
weighted_adj 12.65 0.14 12.79
filter_annot_with_network 5.51 0.10 5.61
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/wppi.Rcheck/00check.log'
for details.
wppi.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/wppi_1.2.0.tar.gz && rm -rf wppi.buildbin-libdir && mkdir wppi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=wppi.buildbin-libdir wppi_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL wppi_1.2.0.zip && rm wppi_1.2.0.tar.gz wppi_1.2.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 419k 100 419k 0 0 858k 0 --:--:-- --:--:-- --:--:-- 860k
install for i386
* installing *source* package 'wppi' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
[2022-04-12 06:31:28] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 06:31:28] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-12 06:31:28] [TRACE] [OmnipathR] Cache locked: FALSE
Note: wrong number of arguments to '/'
** help
*** installing help indices
converting help for package 'wppi'
finding HTML links ... done
common_neighbors html
count_genes html
filter_annot_with_network html
functional_annot html
graph_from_op html
in_omnipath html
prioritization_genes html
process_annot html
random_walk html
score_candidate_genes_from_PPI html
subgraph_op html
weighted_adj html
wppi html
wppi_data html
wppi_go_data html
wppi_hpo_data html
wppi_omnipath_data html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2022-04-12 06:31:34] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 06:31:34] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-12 06:31:34] [TRACE] [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2022-04-12 06:31:38] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 06:31:38] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-12 06:31:38] [TRACE] [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'wppi' ...
** testing if installed package can be loaded
[2022-04-12 06:31:45] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 06:31:45] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-12 06:31:45] [TRACE] [OmnipathR] Cache locked: FALSE
* MD5 sums
packaged installation of 'wppi' as wppi_1.2.0.zip
* DONE (wppi)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'wppi' successfully unpacked and MD5 sums checked
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wppi.Rcheck/examples_i386/wppi-Ex.timings
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wppi.Rcheck/examples_x64/wppi-Ex.timings
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