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This page was generated on 2026-01-07 11:34 -0500 (Wed, 07 Jan 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" 4815
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4593
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 746/2332HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowCore 2.23.1  (landing page)
Mike Jiang
Snapshot Date: 2026-01-06 13:40 -0500 (Tue, 06 Jan 2026)
git_url: https://git.bioconductor.org/packages/flowCore
git_branch: devel
git_last_commit: 4f0009e
git_last_commit_date: 2026-01-01 17:33:10 -0500 (Thu, 01 Jan 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped

BUILD results for flowCore on nebbiolo1

To the developers/maintainers of the flowCore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowCore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowCore
Version: 2.23.1
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
StartedAt: 2026-01-06 17:34:55 -0500 (Tue, 06 Jan 2026)
EndedAt: 2026-01-06 17:34:58 -0500 (Tue, 06 Jan 2026)
EllapsedTime: 3.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
###
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* checking for file ‘flowCore/DESCRIPTION’ ... OK
* preparing ‘flowCore’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘flowCore’ ...
** this is package ‘flowCore’ version ‘2.23.1’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c FastLogicle.cpp -o FastLogicle.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c Hyperlog.cpp -o Hyperlog.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c Logicle.cpp -o Logicle.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c biexponential.cpp -o biexponential.o
In file included from /home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include/cpp11.hpp:7,
                 from biexponential.cpp:2:
/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include/cpp11/data_frame.hpp: In static member function ‘static R_xlen_t cpp11::data_frame::calc_nrow(SEXP)’:
/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include/cpp11/data_frame.hpp:29:16: error: ‘R_nrow’ was not declared in this scope; did you mean ‘nrow’?
   29 |         return R_nrow(x);
      |                ^~~~~~
      |                nrow
compilation terminated due to -Wfatal-errors.
make: *** [/home/biocbuild/bbs-3.23-bioc/R/etc/Makeconf:209: biexponential.o] Error 1
ERROR: compilation failed for package ‘flowCore’
* removing ‘/tmp/RtmpzO6zxO/Rinstfbc03399e578e/flowCore’
      -----------------------------------
ERROR: package installation failed