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This page was generated on 2026-04-07 11:36 -0400 (Tue, 07 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4630
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-26 r89717) -- "Unsuffered Consequences" 4541
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 760/2381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowCore 2.23.3  (landing page)
Mike Jiang
Snapshot Date: 2026-04-06 13:40 -0400 (Mon, 06 Apr 2026)
git_url: https://git.bioconductor.org/packages/flowCore
git_branch: devel
git_last_commit: ed94196
git_last_commit_date: 2026-03-12 20:50:24 -0400 (Thu, 12 Mar 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
See other builds for flowCore in R Universe.

BUILD results for flowCore on kjohnson3

To the developers/maintainers of the flowCore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowCore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowCore
Version: 2.23.3
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
StartedAt: 2026-04-06 16:37:47 -0400 (Mon, 06 Apr 2026)
EndedAt: 2026-04-06 16:37:49 -0400 (Mon, 06 Apr 2026)
EllapsedTime: 2.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
###
##############################################################################
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* checking for file ‘flowCore/DESCRIPTION’ ... OK
* preparing ‘flowCore’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘flowCore’ ...
** this is package ‘flowCore’ version ‘2.23.3’
** using staged installation
** libs
specified C++17
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using C++17
using SDK: ‘MacOSX26.2.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FastLogicle.cpp -o FastLogicle.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Hyperlog.cpp -o Hyperlog.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Logicle.cpp -o Logicle.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c biexponential.cpp -o biexponential.o
In file included from biexponential.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include/cpp11.hpp:3:
/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include/cpp11/R.hpp:128:10: fatal error: use of undeclared identifier 'R_getRegisteredNamespace'
  128 |   return R_getRegisteredNamespace(name);
      |          ^
1 error generated.
make: *** [biexponential.o] Error 1
ERROR: compilation failed for package ‘flowCore’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmpmvun6T/Rinst7e8d1ef62053/flowCore’
      -----------------------------------
ERROR: package installation failed