Mike Jiang
| Snapshot Date: 2026-04-06 13:40 -0400 (Mon, 06 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/flowCore |
| git_branch: devel |
| git_last_commit: ed94196 |
| git_last_commit_date: 2026-03-12 20:50:24 -0400 (Thu, 12 Mar 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-07 11:36 -0400 (Tue, 07 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4630 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-26 r89717) -- "Unsuffered Consequences" | 4541 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 760/2381 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowCore 2.23.3 (landing page) Mike Jiang
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for flowCore in R Universe. | ||||||||||||||
|
To the developers/maintainers of the flowCore package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowCore.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: flowCore |
| Version: 2.23.3 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowCore |
| StartedAt: 2026-04-06 15:10:26 -0400 (Mon, 06 Apr 2026) |
| EndedAt: 2026-04-06 15:10:27 -0400 (Mon, 06 Apr 2026) |
| EllapsedTime: 1.4 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowCore
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘flowCore’ ...
** this is package ‘flowCore’ version ‘2.23.3’
** using staged installation
** libs
specified C++17
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using C++17
using SDK: ‘MacOSX26.2.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FastLogicle.cpp -o FastLogicle.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Hyperlog.cpp -o Hyperlog.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Logicle.cpp -o Logicle.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RProtoBufLib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c biexponential.cpp -o biexponential.o
In file included from biexponential.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include/cpp11.hpp:3:
/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include/cpp11/R.hpp:128:10: fatal error: use of undeclared identifier 'R_getRegisteredNamespace'
128 | return R_getRegisteredNamespace(name);
| ^
1 error generated.
make: *** [biexponential.o] Error 1
ERROR: compilation failed for package ‘flowCore’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library/flowCore’