Aaron Kollotzek
| Snapshot Date: 2025-10-23 14:17 -0400 (Thu, 23 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/anglemania |
| git_branch: devel |
| git_last_commit: ddf0fb8 |
| git_last_commit_date: 2025-10-23 02:30:27 -0400 (Thu, 23 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-24 12:07 -0400 (Fri, 24 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4898 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4688 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4634 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4658 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 68/2359 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| anglemania 0.99.7 (landing page) Aaron Kollotzek
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the anglemania package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/anglemania.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: anglemania |
| Version: 0.99.6 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:anglemania.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings anglemania_0.99.6.tar.gz |
| StartedAt: 2025-10-21 04:27:27 -0000 (Tue, 21 Oct 2025) |
| EndedAt: 2025-10-21 04:27:36 -0000 (Tue, 21 Oct 2025) |
| EllapsedTime: 9.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: anglemania.Rcheck |
| Warnings: NA |
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:anglemania.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings anglemania_0.99.6.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/anglemania.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘anglemania/DESCRIPTION’ ... OK
* this is package ‘anglemania’ version ‘0.99.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘anglemania’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.22-bioc/meat/anglemania.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.22-bioc/meat/anglemania.Rcheck/00check.log’
for details.
anglemania.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL anglemania ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘anglemania’ ... ** this is package ‘anglemania’ version ‘0.99.6’ ** using staged installation ** libs using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/rmio/include' -I'/home/biocbuild/R/R-4.5.0/site-library/bigstatsr/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o anglemania.so RcppExports.o anglemanise_cpp_utils.o -L/home/biocbuild/R/R-4.5.0/lib -lR /usr/bin/ld: i386:x86-64 architecture of input file `anglemanise_cpp_utils.o' is incompatible with aarch64 output /usr/bin/ld: anglemanise_cpp_utils.o: unrecognized relocation type 0x4 in section `.text' /usr/bin/ld: is this version of the linker - (GNU Binutils) 2.41 - out of date ? /usr/bin/ld: final link failed: bad value collect2: error: ld returned 1 exit status make: *** [/home/biocbuild/R/R-4.5.0/share/make/shlib.mk:10: anglemania.so] Error 1 ERROR: compilation failed for package ‘anglemania’ * removing ‘/home/biocbuild/R/R-4.5.0/site-library/anglemania’