Back to Multiple platform build/check report for BioC 3.22:   simplified   long
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-10-03 12:07 -0400 (Fri, 03 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4845
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4632
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4577
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4576
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 67/2337HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
anglemania 0.99.6  (landing page)
Aaron Kollotzek
Snapshot Date: 2025-10-02 13:45 -0400 (Thu, 02 Oct 2025)
git_url: https://git.bioconductor.org/packages/anglemania
git_branch: devel
git_last_commit: 792f3bf
git_last_commit_date: 2025-09-23 10:33:53 -0400 (Tue, 23 Sep 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    OK    ERROR    OK  
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    OK    ERROR    OK  
taishanLinux (openEuler 24.03 LTS) / aarch64  ERROR    OK    ERROR  


INSTALL results for anglemania on taishan

To the developers/maintainers of the anglemania package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/anglemania.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: anglemania
Version: 0.99.6
Command: /home/biocbuild/R/R/bin/R CMD INSTALL anglemania
StartedAt: 2025-10-02 20:42:57 -0000 (Thu, 02 Oct 2025)
EndedAt: 2025-10-02 20:43:03 -0000 (Thu, 02 Oct 2025)
EllapsedTime: 5.9 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL anglemania
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘anglemania’ ...
** this is package ‘anglemania’ version ‘0.99.6’
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/rmio/include' -I'/home/biocbuild/R/R-4.5.0/site-library/bigstatsr/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o anglemania.so RcppExports.o anglemanise_cpp_utils.o -L/home/biocbuild/R/R-4.5.0/lib -lR
/usr/bin/ld: i386:x86-64 architecture of input file `anglemanise_cpp_utils.o' is incompatible with aarch64 output
/usr/bin/ld: anglemanise_cpp_utils.o: unrecognized relocation type 0x4 in section `.text'
/usr/bin/ld: is this version of the linker - (GNU Binutils) 2.41 - out of date ?
/usr/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status
make: *** [/home/biocbuild/R/R-4.5.0/share/make/shlib.mk:10: anglemania.so] Error 1
ERROR: compilation failed for package ‘anglemania’
* removing ‘/home/biocbuild/R/R-4.5.0/site-library/anglemania’