Aaron Kollotzek
| Snapshot Date: 2025-10-02 13:45 -0400 (Thu, 02 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/anglemania |
| git_branch: devel |
| git_last_commit: 792f3bf |
| git_last_commit_date: 2025-09-23 10:33:53 -0400 (Tue, 23 Sep 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-03 12:04 -0400 (Fri, 03 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4845 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4632 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4577 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4576 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 67/2337 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| anglemania 0.99.6 (landing page) Aaron Kollotzek
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | OK | ERROR | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | OK | ERROR | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | OK | ERROR | ||||||||||
|
To the developers/maintainers of the anglemania package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/anglemania.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: anglemania |
| Version: 0.99.6 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:anglemania.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings anglemania_0.99.6.tar.gz |
| StartedAt: 2025-10-02 19:38:54 -0400 (Thu, 02 Oct 2025) |
| EndedAt: 2025-10-02 19:39:00 -0400 (Thu, 02 Oct 2025) |
| EllapsedTime: 5.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: anglemania.Rcheck |
| Warnings: NA |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:anglemania.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings anglemania_0.99.6.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/anglemania.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘anglemania/DESCRIPTION’ ... OK
* this is package ‘anglemania’ version ‘0.99.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘anglemania’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.22-bioc/meat/anglemania.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/Users/biocbuild/bbs-3.22-bioc/meat/anglemania.Rcheck/00check.log’
for details.
anglemania.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL anglemania ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘anglemania’ ... ** this is package ‘anglemania’ version ‘0.99.6’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/rmio/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/bigstatsr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o anglemania.so RcppExports.o anglemanise_cpp_utils.o -F/Library/Frameworks/R.framework/.. -framework R ld: warning: ignoring file anglemanise_cpp_utils.o, building for macOS-x86_64 but attempting to link with file built for unknown-unsupported file format ( 0x7F 0x45 0x4C 0x46 0x02 0x01 0x01 0x03 0x00 0x00 0x00 0x00 0x00 0x00 0x00 0x00 ) installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-anglemania/00new/anglemania/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘anglemania’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-anglemania/00new/anglemania/libs/anglemania.so': dlopen(/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-anglemania/00new/anglemania/libs/anglemania.so, 0x0006): symbol not found in flat namespace (__Z16select_genes_cppN4Rcpp16Environment_ImplINS_15PreserveStorageEEES2_dd) Error: loading failed Execution halted ERROR: loading failed * removing ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/anglemania’