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This page was generated on 2025-10-31 08:34 -0400 (Fri, 31 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 924/2321HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSEABenchmarkeR 1.31.0  (landing page)
Ludwig Geistlinger
Snapshot Date: 2025-10-30 13:40 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/GSEABenchmarkeR
git_branch: devel
git_last_commit: 129d655
git_last_commit_date: 2025-10-29 10:44:06 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for GSEABenchmarkeR on nebbiolo1

To the developers/maintainers of the GSEABenchmarkeR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSEABenchmarkeR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GSEABenchmarkeR
Version: 1.31.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSEABenchmarkeR
StartedAt: 2025-10-30 17:24:48 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 17:26:00 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 72.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSEABenchmarkeR
###
##############################################################################
##############################################################################


* checking for file ‘GSEABenchmarkeR/DESCRIPTION’ ... OK
* preparing ‘GSEABenchmarkeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GSEABenchmarkeR.Rmd’ using rmarkdown

Quitting from GSEABenchmarkeR.Rmd:174-176 [maPreproc]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get()`:
! object 'hgu133a.db' not found
---
Backtrace:
    ▆
 1. └─GSEABenchmarkeR::maPreproc(geo2kegg[1:5])
 2.   ├─base::suppressMessages(...)
 3.   │ └─base::withCallingHandlers(...)
 4.   └─base::sapply(...)
 5.     └─base::lapply(X = X, FUN = FUN, ...)
 6.       └─GSEABenchmarkeR (local) FUN(X[[i]], ...)
 7.         └─base::get(anno.pkg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GSEABenchmarkeR.Rmd' failed with diagnostics:
object 'hgu133a.db' not found
--- failed re-building ‘GSEABenchmarkeR.Rmd’

SUMMARY: processing the following file failed:
  ‘GSEABenchmarkeR.Rmd’

Error: Vignette re-building failed.
Execution halted