Ludwig Geistlinger
| Snapshot Date: 2025-11-20 13:40 -0500 (Thu, 20 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/GSEABenchmarkeR |
| git_branch: devel |
| git_last_commit: 129d655 |
| git_last_commit_date: 2025-10-29 10:44:06 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-21 11:39 -0500 (Fri, 21 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4829 |
| lconway | macOS 12.7.6 Monterey | x86_64 | R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" | 4602 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4566 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 927/2327 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GSEABenchmarkeR 1.31.0 (landing page) Ludwig Geistlinger
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the GSEABenchmarkeR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSEABenchmarkeR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GSEABenchmarkeR |
| Version: 1.31.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GSEABenchmarkeR |
| StartedAt: 2025-11-20 16:34:13 -0500 (Thu, 20 Nov 2025) |
| EndedAt: 2025-11-20 16:35:28 -0500 (Thu, 20 Nov 2025) |
| EllapsedTime: 74.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GSEABenchmarkeR
###
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* checking for file ‘GSEABenchmarkeR/DESCRIPTION’ ... OK
* preparing ‘GSEABenchmarkeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GSEABenchmarkeR.Rmd’ using rmarkdown
Quitting from GSEABenchmarkeR.Rmd:263-266 [deAna]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.iter()`:
! Error in reducer$value.cache[[as.character(idx)]] <- values :
wrong args for environment subassignment
---
Backtrace:
▆
1. └─GSEABenchmarkeR::runDE(geo2kegg, de.method = "limma", padj.method = "flexible")
2. └─GSEABenchmarkeR:::.iter(exp.list, .de, ..., parallel = parallel)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'GSEABenchmarkeR.Rmd' failed with diagnostics:
Error in reducer$value.cache[[as.character(idx)]] <- values :
wrong args for environment subassignment
--- failed re-building ‘GSEABenchmarkeR.Rmd’
SUMMARY: processing the following file failed:
‘GSEABenchmarkeR.Rmd’
Error: Vignette re-building failed.
Execution halted