| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-10-31 08:34 -0400 (Fri, 31 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4428 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 283/2321 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CatsCradle 1.5.0 (landing page) Michael Shapiro
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
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To the developers/maintainers of the CatsCradle package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CatsCradle.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CatsCradle |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CatsCradle |
| StartedAt: 2025-10-30 16:23:24 -0400 (Thu, 30 Oct 2025) |
| EndedAt: 2025-10-30 16:28:30 -0400 (Thu, 30 Oct 2025) |
| EllapsedTime: 306.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CatsCradle
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* checking for file ‘CatsCradle/DESCRIPTION’ ... OK
* preparing ‘CatsCradle’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘CatsCradle.Rmd’ using rmarkdown
Quitting from CatsCradle.Rmd:59-63 [[CC2]]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.frame()`:
! arguments imply differing number of rows: 0, 540
---
Backtrace:
▆
1. └─Seurat::DimPlot(exSeuratObj, cols = "polychrome")
2. └─base::cbind(embed, meta)
3. └─base::cbind(deparse.level, ...)
4. └─base::data.frame(..., check.names = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CatsCradle.Rmd' failed with diagnostics:
arguments imply differing number of rows: 0, 540
--- failed re-building ‘CatsCradle.Rmd’
--- re-building ‘CatsCradleExampleData.Rmd’ using rmarkdown
--- finished re-building ‘CatsCradleExampleData.Rmd’
--- re-building ‘CatsCradleQuickStart.Rmd’ using rmarkdown
Quitting from CatsCradleQuickStart.Rmd:39-44 [[QS1]]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.frame()`:
! arguments imply differing number of rows: 0, 540
---
Backtrace:
▆
1. └─Seurat::DimPlot(exSeuratObj, cols = "polychrome")
2. └─base::cbind(embed, meta)
3. └─base::cbind(deparse.level, ...)
4. └─base::data.frame(..., check.names = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CatsCradleQuickStart.Rmd' failed with diagnostics:
arguments imply differing number of rows: 0, 540
--- failed re-building ‘CatsCradleQuickStart.Rmd’
--- re-building ‘CatsCradleSingleCellExperimentQuickStart.Rmd’ using rmarkdown
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[----|----|----|----|----|----|----|----|----|----|
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--- finished re-building ‘CatsCradleSingleCellExperimentQuickStart.Rmd’
--- re-building ‘CatsCradleSpatial.Rmd’ using rmarkdown
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
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[----|----|----|----|----|----|----|----|----|----|
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--- finished re-building ‘CatsCradleSpatial.Rmd’
SUMMARY: processing the following files failed:
‘CatsCradle.Rmd’ ‘CatsCradleQuickStart.Rmd’
Error: Vignette re-building failed.
Execution halted