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BUILD BIN report for BiocNeighbors on tokay1

This page was generated on 2019-04-13 11:29:29 -0400 (Sat, 13 Apr 2019).

Package 139/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocNeighbors 1.0.0
Aaron Lun
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/BiocNeighbors
Branch: RELEASE_3_8
Last Commit: e252fc0
Last Changed Date: 2018-10-30 11:42:09 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocNeighbors
Version: 1.0.0
Command: rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocNeighbors.buildbin-libdir BiocNeighbors_1.0.0.tar.gz
StartedAt: 2019-04-13 06:57:28 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 06:59:01 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 93.7 seconds
RetCode: 0
Status:  OK  
PackageFile: BiocNeighbors_1.0.0.zip
PackageFileSize: 1.612 MiB

Command output

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### Running command:
###
###   rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocNeighbors.buildbin-libdir BiocNeighbors_1.0.0.tar.gz
###
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install for i386

* installing *source* package 'BiocNeighbors' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c annoy_stubs.cpp -o annoy_stubs.o
In file included from C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
                 from annoy.h:13,
                 from annoy_stubs.cpp:2:
C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
                                                ^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
                                                    ^
In file included from annoy_stubs.cpp:5:0:
query_annoy.h: In function 'SEXPREC* query_annoy(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
query_annoy.h:12:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (size_t(Query.nrow())!=Ndim) {
                             ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_kmknn.cpp -o find_kmknn.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_neighbors.cpp -o find_neighbors.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c kmknn.cpp -o kmknn.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_kmknn.cpp -o query_kmknn.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_neighbors.cpp -o query_neighbors.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def annoy_stubs.o find_kmknn.o find_neighbors.o init.o kmknn.o query_kmknn.o query_neighbors.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/BiocNeighbors.buildbin-libdir/BiocNeighbors/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocNeighbors'
    finding HTML links ... done
    AnnoyIndex                              html  
    AnnoyParam                              html  
    BiocNeighborIndex                       html  
    BiocNeighborParam                       html  
    KmknnIndex                              html  
    KmknnParam                              html  
    buildAnnoy                              html  
    buildKmknn                              html  
    buildNNIndex                            html  
    findAnnoy                               html  
    finding level-2 HTML links ... done

    findKNN                                 html  
    findKmknn                               html  
    findNeighbors                           html  
    queryAnnoy                              html  
    queryKNN                                html  
    queryKmknn                              html  
    queryNeighbors                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'BiocNeighbors' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c annoy_stubs.cpp -o annoy_stubs.o
In file included from C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include/annoylib.h:42:0,
                 from annoy.h:13,
                 from annoy_stubs.cpp:2:
C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include/mman.h: In function 'void* mmap(void*, size_t, int, int, int, off_t)':
C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include/mman.h:102:48: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((off >> 32) & 0xFFFFFFFFL);
                                                ^
C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include/mman.h:111:52: warning: right shift count >= width of type
                     (DWORD)0 : (DWORD)((maxSize >> 32) & 0xFFFFFFFFL);
                                                    ^
In file included from annoy_stubs.cpp:5:0:
query_annoy.h: In function 'SEXPREC* query_annoy(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
query_annoy.h:12:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (size_t(Query.nrow())!=Ndim) {
                             ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_kmknn.cpp -o find_kmknn.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_neighbors.cpp -o find_neighbors.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c kmknn.cpp -o kmknn.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_kmknn.cpp -o query_kmknn.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c query_neighbors.cpp -o query_neighbors.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BiocNeighbors.dll tmp.def annoy_stubs.o find_kmknn.o find_neighbors.o init.o kmknn.o query_kmknn.o query_neighbors.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/BiocNeighbors.buildbin-libdir/BiocNeighbors/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocNeighbors' as BiocNeighbors_1.0.0.zip
* DONE (BiocNeighbors)
In R CMD INSTALL
In R CMD INSTALL