Package: BiocNeighbors

Version: 1.0.0

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL BiocNeighbors

StartedAt: 2019-04-15 18:05:08 -0400 (Mon, 15 Apr 2019)

EndedAt: 2019-04-15 18:05:58 -0400 (Mon, 15 Apr 2019)

EllapsedTime: 49.3 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL BiocNeighbors
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘BiocNeighbors’ ...
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include" -I/usr/local/include   -fpic  -g -O2 -Wall -c annoy_stubs.cpp -o annoy_stubs.o
In file included from annoy_stubs.cpp:5:0:
query_annoy.h: In function ‘SEXPREC* query_annoy(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
query_annoy.h:12:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (size_t(Query.nrow())!=Ndim) {
                             ^
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include" -I/usr/local/include   -fpic  -g -O2 -Wall -c find_kmknn.cpp -o find_kmknn.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include" -I/usr/local/include   -fpic  -g -O2 -Wall -c find_neighbors.cpp -o find_neighbors.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include" -I/usr/local/include   -fpic  -g -O2 -Wall -c init.cpp -o init.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include" -I/usr/local/include   -fpic  -g -O2 -Wall -c kmknn.cpp -o kmknn.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include" -I/usr/local/include   -fpic  -g -O2 -Wall -c query_kmknn.cpp -o query_kmknn.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include" -I/usr/local/include   -fpic  -g -O2 -Wall -c query_neighbors.cpp -o query_neighbors.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppAnnoy/include" -I/usr/local/include   -fpic  -g -O2 -Wall -c utils.cpp -o utils.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o BiocNeighbors.so annoy_stubs.o find_kmknn.o find_neighbors.o init.o kmknn.o query_kmknn.o query_neighbors.o utils.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/BiocNeighbors/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BiocNeighbors)