Estefania Mancini
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/ASpli |
| Branch: RELEASE_3_7 |
| Last Commit: 2d246b3 |
| Last Changed Date: 2018-04-30 10:35:43 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:56:55 -0400 (Wed, 17 Oct 2018).
| Package 77/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ASpli 1.6.0 Estefania Mancini
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: ASpli |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ASpli.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ASpli_1.6.0.tar.gz |
| StartedAt: 2018-10-16 19:56:25 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:02:46 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 381.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASpli.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ASpli.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ASpli_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/ASpli.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ASpli/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ASpli’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ASpli’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotGenomicRegions 17.325 0.104 17.619
plotBins 11.492 0.067 11.694
ASpli-package 8.786 0.263 9.135
mergeBinDUAS-method 8.598 0.027 8.729
subset-methods 7.195 0.024 7.267
AsDiscover-methods 6.481 0.069 6.591
containsJunctions-function 5.519 0.020 5.596
rds 5.291 0.019 5.371
junctionDUreport 5.270 0.018 5.337
DUreportBinSplice-method 5.210 0.023 5.275
readCounts 5.157 0.022 5.224
filterDU-method 5.004 0.017 5.069
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASpli.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ASpli ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘ASpli’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ASpli)
ASpli.Rcheck/ASpli-Ex.timings
| name | user | system | elapsed | |
| ASpli-package | 8.786 | 0.263 | 9.135 | |
| AsDiscover-methods | 6.481 | 0.069 | 6.591 | |
| DUreport | 4.849 | 0.020 | 4.904 | |
| DUreportBinSplice-method | 5.210 | 0.023 | 5.275 | |
| acc_AS | 0.024 | 0.002 | 0.026 | |
| acc_DU | 0.012 | 0.001 | 0.014 | |
| acc_counts | 0.024 | 0.002 | 0.027 | |
| acc_features | 0.201 | 0.000 | 0.204 | |
| binGenome | 2.808 | 0.010 | 2.846 | |
| containsJunctions-function | 5.519 | 0.020 | 5.596 | |
| example_data | 0.552 | 0.012 | 0.572 | |
| filterDU-method | 5.004 | 0.017 | 5.069 | |
| getConditions-function | 0.014 | 0.000 | 0.014 | |
| junctionDUreport | 5.270 | 0.018 | 5.337 | |
| loadBAM | 0.171 | 0.004 | 0.175 | |
| mergeBinDUAS-method | 8.598 | 0.027 | 8.729 | |
| plotBins | 11.492 | 0.067 | 11.694 | |
| plotGenomicRegions | 17.325 | 0.104 | 17.619 | |
| rds | 5.291 | 0.019 | 5.371 | |
| readCounts | 5.157 | 0.022 | 5.224 | |
| subset-methods | 7.195 | 0.024 | 7.267 | |