Package: HilbertCurve

Version: 1.9.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings HilbertCurve_1.9.1.tar.gz

StartedAt: 2018-04-12 05:02:38 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 05:05:04 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 146.0 seconds

RetCode: 0

Status:  OK

CheckDir: HilbertCurve.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings HilbertCurve_1.9.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.9.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.7Mb
  sub-directories of 1Mb or more:
    doc   8.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        18.650  0.535  19.548
hc_layer-GenomicHilbertCurve-method 10.851  0.158  11.184
GenomicHilbertCurve                  9.660  0.065  10.700
hc_png-HilbertCurve-method           6.430  0.169   6.725
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.6-bioc/meat/HilbertCurve.Rcheck/00check.log’
for details.

* installing *source* package ‘HilbertCurve’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HilbertCurve)

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 8 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  3.788   0.140   3.982 

name	user	system	elapsed
GenomicHilbertCurve-class	0.001	0.000	0.000
GenomicHilbertCurve	9.660	0.065	10.700
HilbertCurve-class	0.001	0.000	0.001
HilbertCurve	1.415	0.013	1.468
default_overlay	0.000	0.000	0.001
hc_centered_text-HilbertCurve-method	0.120	0.001	0.121
hc_layer-GenomicHilbertCurve-method	10.851	0.158	11.184
hc_layer-HilbertCurve-method	18.650	0.535	19.548
hc_layer-dispatch	0.001	0.000	0.001
hc_level-HilbertCurve-method	0.033	0.002	0.035
hc_map-GenomicHilbertCurve-method	2.994	0.017	3.101
hc_normal_points-HilbertCurve-method	0	0	0
hc_offset-HilbertCurve-method	0.023	0.001	0.025
hc_png-HilbertCurve-method	6.430	0.169	6.725
hc_points-GenomicHilbertCurve-method	0.326	0.005	0.370
hc_points-HilbertCurve-method	0.653	0.010	0.688
hc_points-dispatch	0.001	0.000	0.000
hc_polygon-GenomicHilbertCurve-method	0.439	0.004	0.444
hc_polygon-HilbertCurve-method	0.047	0.001	0.050
hc_polygon-dispatch	0.001	0.000	0.001
hc_rect-GenomicHilbertCurve-method	0.255	0.002	0.260
hc_rect-HilbertCurve-method	0.038	0.001	0.039
hc_rect-dispatch	0.001	0.000	0.001
hc_segmented_points-HilbertCurve-method	0.001	0.000	0.000
hc_segments-GenomicHilbertCurve-method	0.615	0.003	0.633
hc_segments-HilbertCurve-method	0.061	0.000	0.065
hc_segments-dispatch	0.000	0.000	0.001
hc_text-GenomicHilbertCurve-method	0.117	0.001	0.122
hc_text-HilbertCurve-method	0.086	0.001	0.087
hc_text-dispatch	0.001	0.000	0.000
show-HilbertCurve-method	0.008	0.000	0.008
unzoom-HilbertCurve-method	0.007	0.001	0.007
zoom-HilbertCurve-method	0.007	0.000	0.007