Multiple platform build/check report for BioC 3.23 - BUILD results for BulkSignalR on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 alpha (2026-04-05 r89794)	4957
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 alpha (2026-04-08 r89818)	4686
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4627
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BulkSignalR on kunpeng2

To the developers/maintainers of the BulkSignalR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BulkSignalR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: BulkSignalR

Version: 1.3.2

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BulkSignalR

StartedAt: 2026-04-16 22:41:14 -0000 (Thu, 16 Apr 2026)

EndedAt: 2026-04-16 22:43:03 -0000 (Thu, 16 Apr 2026)

EllapsedTime: 108.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BulkSignalR
###
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* checking for file ‘BulkSignalR/DESCRIPTION’ ... OK
* preparing ‘BulkSignalR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BulkSignalR-Configure.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "BulkSignalR-Configure", and the latter is "BulkSignalR : </br> Inference of ligand-receptor interactions from bulk data or spatial transcriptomics". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
[WARNING] This document format requires a nonempty <title> element.
  Defaulting to 'BulkSignalR-Configure.knit' as the title.
  To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building ‘BulkSignalR-Configure.Rmd’

--- re-building ‘BulkSignalR-Differential.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
  Defaulting to 'BulkSignalR-Differential.knit' as the title.
  To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building ‘BulkSignalR-Differential.Rmd’

--- re-building ‘BulkSignalR-Main.Rmd’ using rmarkdown

Quitting from BulkSignalR-Main.Rmd:50-54 [load-libs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package 'ExperimentHub' required by 'STexampleData' could not be found
---
Backtrace:
    ▆
 1. └─base::library(STexampleData)
 2.   └─base::.getRequiredPackages2(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BulkSignalR-Main.Rmd' failed with diagnostics:
package 'ExperimentHub' required by 'STexampleData' could not be found
--- failed re-building ‘BulkSignalR-Main.Rmd’

SUMMARY: processing the following file failed:
  ‘BulkSignalR-Main.Rmd’

Error: Vignette re-building failed.
Execution halted