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This page was generated on 2025-08-15 12:07 -0400 (Fri, 15 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4554
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4535
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2313/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
zenith 1.11.0  (landing page)
Gabriel Hoffman
Snapshot Date: 2025-08-14 13:45 -0400 (Thu, 14 Aug 2025)
git_url: https://git.bioconductor.org/packages/zenith
git_branch: devel
git_last_commit: 3dbfcb4
git_last_commit_date: 2025-04-15 12:54:36 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for zenith on palomino8

To the developers/maintainers of the zenith package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/zenith.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: zenith
Version: 1.11.0
Command: chmod a+r zenith -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data zenith
StartedAt: 2025-08-15 00:03:10 -0400 (Fri, 15 Aug 2025)
EndedAt: 2025-08-15 00:04:16 -0400 (Fri, 15 Aug 2025)
EllapsedTime: 66.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r zenith -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data zenith
###
##############################################################################
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* checking for file 'zenith/DESCRIPTION' ... OK
* preparing 'zenith':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'loading_genesets.Rmd' using rmarkdown
--- finished re-building 'loading_genesets.Rmd'

--- re-building 'zenith.Rmd' using rmarkdown

Quitting from zenith.Rmd:34-73 [standard]
Error: processing vignette 'zenith.Rmd' failed with diagnostics:
evaluation nested too deeply: infinite recursion / options(expressions=)?
--- failed re-building 'zenith.Rmd'

SUMMARY: processing the following file failed:
  'zenith.Rmd'

Error: Vignette re-building failed.
Execution halted