Multiple platform build/check report for BioC 3.22 - BUILD results for microSTASIS on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4554
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4595
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4537
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4535
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for microSTASIS on palomino8

To the developers/maintainers of the microSTASIS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/microSTASIS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: microSTASIS

Version: 1.9.0

Command: chmod a+r microSTASIS -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data microSTASIS

StartedAt: 2025-08-14 21:29:06 -0400 (Thu, 14 Aug 2025)

EndedAt: 2025-08-14 21:30:24 -0400 (Thu, 14 Aug 2025)

EllapsedTime: 77.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r microSTASIS -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data microSTASIS
###
##############################################################################
##############################################################################


* checking for file 'microSTASIS/DESCRIPTION' ... OK
* preparing 'microSTASIS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'microSTASIS.Rmd' using rmarkdown

Quitting from microSTASIS.Rmd:189-196 [CV]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
  2 remote errors, element index: 2, 3
  0 unevaluated and other errors
  first remote error:
Error in socketConnection(port = port, server = TRUE, blocking = TRUE, : cannot open the connection
---
Backtrace:
    ▆
 1. ├─BiocParallel::bpmapply(...)
 2. └─BiocParallel::bpmapply(...)
 3.   ├─BiocParallel::bpmapply(...)
 4.   └─BiocParallel::bpmapply(...)
 5.     ├─BiocParallel::bplapply(...)
 6.     └─BiocParallel::bplapply(...)
 7.       └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'microSTASIS.Rmd' failed with diagnostics:
BiocParallel errors
  2 remote errors, element index: 2, 3
  0 unevaluated and other errors
  first remote error:
Error in socketConnection(port = port, server = TRUE, blocking = TRUE, : cannot open the connection

--- failed re-building 'microSTASIS.Rmd'

SUMMARY: processing the following file failed:
  'microSTASIS.Rmd'

Error: Vignette re-building failed.
Execution halted