Aaron Lun
| Snapshot Date: 2025-08-14 13:45 -0400 (Thu, 14 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/basilisk.utils |
| git_branch: devel |
| git_last_commit: f0a06f8 |
| git_last_commit_date: 2025-05-17 00:49:01 -0400 (Sat, 17 May 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-15 12:06 -0400 (Fri, 15 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4554 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 140/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk.utils 1.21.2 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the basilisk.utils package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.utils.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk.utils |
| Version: 1.21.2 |
| Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:basilisk.utils.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings basilisk.utils_1.21.2.tar.gz |
| StartedAt: 2025-08-15 00:43:10 -0400 (Fri, 15 Aug 2025) |
| EndedAt: 2025-08-15 00:53:37 -0400 (Fri, 15 Aug 2025) |
| EllapsedTime: 626.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.utils.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:basilisk.utils.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings basilisk.utils_1.21.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.22-bioc/meat/basilisk.utils.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'basilisk.utils/DESCRIPTION' ... OK
* this is package 'basilisk.utils' version '1.21.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'basilisk.utils' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
basilisk.utils.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL basilisk.utils ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library' * installing *source* package 'basilisk.utils' ... ** this is package 'basilisk.utils' version '1.21.2' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (basilisk.utils)
basilisk.utils.Rcheck/tests/testthat.Rout
R version 4.5.1 (2025-06-13 ucrt) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk.utils)
Attaching package: 'basilisk.utils'
The following object is masked from 'package:utils':
find
> test_check("basilisk.utils")
Retrieving notices: ...working... done
Channels:
- conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.22-bioc\tmpdir\RtmpmGlU8O\file1c2484e0232b4\foo\biocconda\more-test-env
added / updated specs:
- pandas
The following NEW packages will be INSTALLED:
bzip2 conda-forge/win-64::bzip2-1.0.8-h2466b09_7
ca-certificates conda-forge/noarch::ca-certificates-2025.8.3-h4c7d964_0
libblas conda-forge/win-64::libblas-3.9.0-34_h5709861_mkl
libcblas conda-forge/win-64::libcblas-3.9.0-34_h2a3cdd5_mkl
libexpat conda-forge/win-64::libexpat-2.7.1-hac47afa_0
libffi conda-forge/win-64::libffi-3.4.6-h537db12_1
libhwloc conda-forge/win-64::libhwloc-2.12.1-default_h88281d1_1000
libiconv conda-forge/win-64::libiconv-1.18-hc1393d2_2
liblapack conda-forge/win-64::liblapack-3.9.0-34_hf9ab0e9_mkl
liblzma conda-forge/win-64::liblzma-5.8.1-h2466b09_2
libmpdec conda-forge/win-64::libmpdec-4.0.0-h2466b09_0
libsqlite conda-forge/win-64::libsqlite-3.50.4-hf5d6505_0
libwinpthread conda-forge/win-64::libwinpthread-12.0.0.r4.gg4f2fc60ca-h57928b3_9
libxml2 conda-forge/win-64::libxml2-2.13.8-h741aa76_1
libzlib conda-forge/win-64::libzlib-1.3.1-h2466b09_2
llvm-openmp conda-forge/win-64::llvm-openmp-20.1.8-hfa2b4ca_1
mkl conda-forge/win-64::mkl-2024.2.2-h57928b3_16
numpy conda-forge/win-64::numpy-2.3.2-py313hce7ae62_0
openssl conda-forge/win-64::openssl-3.5.2-h725018a_0
pandas conda-forge/win-64::pandas-2.3.1-py313hc90dcd4_0
pip conda-forge/noarch::pip-25.2-pyh145f28c_0
python conda-forge/win-64::python-3.13.5-h7de537c_102_cp313
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.13-8_cp313
pytz conda-forge/noarch::pytz-2025.2-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
tbb conda-forge/win-64::tbb-2021.13.0-h18a62a1_2
tk conda-forge/win-64::tk-8.6.13-h2c6b04d_2
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_1
vc conda-forge/win-64::vc-14.3-h41ae7f8_31
vc14_runtime conda-forge/win-64::vc14_runtime-14.44.35208-h818238b_31
vcomp14 conda-forge/win-64::vcomp14-14.44.35208-h818238b_31
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.22-bioc\tmpdir\RtmpmGlU8O\file1c2484e0232b4\foo\biocconda\test-env
added / updated specs:
- hdf5
The following NEW packages will be INSTALLED:
ca-certificates conda-forge/noarch::ca-certificates-2025.8.3-h4c7d964_0
hdf5 conda-forge/win-64::hdf5-1.14.6-nompi_he30205f_103
krb5 conda-forge/win-64::krb5-1.21.3-hdf4eb48_0
libaec conda-forge/win-64::libaec-1.1.4-h20038f6_0
libcurl conda-forge/win-64::libcurl-8.14.1-h88aaa65_0
libssh2 conda-forge/win-64::libssh2-1.11.1-h9aa295b_0
libzlib conda-forge/win-64::libzlib-1.3.1-h2466b09_2
openssl conda-forge/win-64::openssl-3.5.2-h725018a_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_1
vc conda-forge/win-64::vc-14.3-h41ae7f8_31
vc14_runtime conda-forge/win-64::vc14_runtime-14.44.35208-h818238b_31
vcomp14 conda-forge/win-64::vcomp14-14.44.35208-h818238b_31
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.22-bioc\tmpdir\RtmpmGlU8O\file1c248620fdc4\test_env\1.0.0
added / updated specs:
- hdf5
The following NEW packages will be INSTALLED:
ca-certificates conda-forge/noarch::ca-certificates-2025.8.3-h4c7d964_0
hdf5 conda-forge/win-64::hdf5-1.14.6-nompi_he30205f_103
krb5 conda-forge/win-64::krb5-1.21.3-hdf4eb48_0
libaec conda-forge/win-64::libaec-1.1.4-h20038f6_0
libcurl conda-forge/win-64::libcurl-8.14.1-h88aaa65_0
libssh2 conda-forge/win-64::libssh2-1.11.1-h9aa295b_0
libzlib conda-forge/win-64::libzlib-1.3.1-h2466b09_2
openssl conda-forge/win-64::openssl-3.5.2-h725018a_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_1
vc conda-forge/win-64::vc-14.3-h41ae7f8_31
vc14_runtime conda-forge/win-64::vc14_runtime-14.44.35208-h818238b_31
vcomp14 conda-forge/win-64::vcomp14-14.44.35208-h818238b_31
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.22-bioc\tmpdir\RtmpmGlU8O\file1c248620fdc4\test_env\1.0.1
added / updated specs:
- hdf5
The following NEW packages will be INSTALLED:
ca-certificates conda-forge/noarch::ca-certificates-2025.8.3-h4c7d964_0
hdf5 conda-forge/win-64::hdf5-1.14.6-nompi_he30205f_103
krb5 conda-forge/win-64::krb5-1.21.3-hdf4eb48_0
libaec conda-forge/win-64::libaec-1.1.4-h20038f6_0
libcurl conda-forge/win-64::libcurl-8.14.1-h88aaa65_0
libssh2 conda-forge/win-64::libssh2-1.11.1-h9aa295b_0
libzlib conda-forge/win-64::libzlib-1.3.1-h2466b09_2
openssl conda-forge/win-64::openssl-3.5.2-h725018a_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_1
vc conda-forge/win-64::vc-14.3-h41ae7f8_31
vc14_runtime conda-forge/win-64::vc14_runtime-14.44.35208-h818238b_31
vcomp14 conda-forge/win-64::vcomp14-14.44.35208-h818238b_31
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.22-bioc\tmpdir\RtmpmGlU8O\file1c248620fdc4\test_env\1.0.0
added / updated specs:
- hdf5
The following NEW packages will be INSTALLED:
ca-certificates conda-forge/noarch::ca-certificates-2025.8.3-h4c7d964_0
hdf5 conda-forge/win-64::hdf5-1.14.6-nompi_he30205f_103
krb5 conda-forge/win-64::krb5-1.21.3-hdf4eb48_0
libaec conda-forge/win-64::libaec-1.1.4-h20038f6_0
libcurl conda-forge/win-64::libcurl-8.14.1-h88aaa65_0
libssh2 conda-forge/win-64::libssh2-1.11.1-h9aa295b_0
libzlib conda-forge/win-64::libzlib-1.3.1-h2466b09_2
openssl conda-forge/win-64::openssl-3.5.2-h725018a_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_1
vc conda-forge/win-64::vc-14.3-h41ae7f8_31
vc14_runtime conda-forge/win-64::vc14_runtime-14.44.35208-h818238b_31
vcomp14 conda-forge/win-64::vcomp14-14.44.35208-h818238b_31
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
PackagesNotFoundError: The following packages are not available from current channels:
- aaronrandompackageshouldntexist
Current channels:
- https://conda.anaconda.org/conda-forge
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
>
> proc.time()
user system elapsed
1.03 0.42 587.39
basilisk.utils.Rcheck/basilisk.utils-Ex.timings
| name | user | system | elapsed | |
| binaryPath | 0 | 0 | 0 | |
| configureEnvironments | 0 | 0 | 0 | |
| createEnvironment | 0.00 | 0.02 | 0.02 | |
| defaults | 0 | 0 | 0 | |
| download | 0 | 0 | 0 | |
| find | 0.02 | 0.00 | 4.67 | |