| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-15 12:07 -0400 (Fri, 15 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4554 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1677/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rarr 1.9.0 (landing page) Mike Smith
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the Rarr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rarr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Rarr |
| Version: 1.9.0 |
| Command: rm -rf Rarr.buildbin-libdir && mkdir Rarr.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=Rarr.buildbin-libdir Rarr_1.9.0.tar.gz |
| StartedAt: 2025-08-15 11:03:21 -0400 (Fri, 15 Aug 2025) |
| EndedAt: 2025-08-15 11:05:35 -0400 (Fri, 15 Aug 2025) |
| EllapsedTime: 133.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Rarr_1.9.0.zip |
| PackageFileSize: 1.582 MiB |
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### Running command:
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### rm -rf Rarr.buildbin-libdir && mkdir Rarr.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=Rarr.buildbin-libdir Rarr_1.9.0.tar.gz
###
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* installing *source* package 'Rarr' ...
** this is package 'Rarr' version '1.9.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
gcc -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c Rarr.c -o Rarr.o
gcc -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c bit64_conversion.c -o bit64_conversion.o
gcc -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c compress.c -o compress.o
gcc -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c decompress.c -o decompress.o
gcc -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c float16_conversion.c -o float16_conversion.o
gcc -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c type_conversion.c -o type_conversion.o
/usr/bin/make -C compression_tools/zstd
make[1]: Entering directory '/f/biocbuild/bbs-3.22-bioc/tmpdir/RtmpErqd3c/R.INSTALL7c5447096ecb/Rarr/src/compression_tools/zstd'
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o
rm -f libzstd.a
ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o
ranlib libzstd.a
make[1]: Leaving directory '/f/biocbuild/bbs-3.22-bioc/tmpdir/RtmpErqd3c/R.INSTALL7c5447096ecb/Rarr/src/compression_tools/zstd'
/usr/bin/make -C compression_tools/blosc
make[1]: Entering directory '/f/biocbuild/bbs-3.22-bioc/tmpdir/RtmpErqd3c/R.INSTALL7c5447096ecb/Rarr/src/compression_tools/blosc'
/usr/bin/make -C lib/snappy-1.1.1
make[2]: Entering directory '/f/biocbuild/bbs-3.22-bioc/tmpdir/RtmpErqd3c/R.INSTALL7c5447096ecb/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1'
g++ -std=gnu++17 -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -DUSING_R -c snappy.cc
g++ -std=gnu++17 -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -DUSING_R -c snappy-c.cc
g++ -std=gnu++17 -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -DUSING_R -c snappy-sinksource.cc
g++ -std=gnu++17 -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -DUSING_R -c snappy-stubs-internal.cc
make[2]: Leaving directory '/f/biocbuild/bbs-3.22-bioc/tmpdir/RtmpErqd3c/R.INSTALL7c5447096ecb/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1'
/usr/bin/make -C lib/lz4-1.9.2
make[2]: Entering directory '/f/biocbuild/bbs-3.22-bioc/tmpdir/RtmpErqd3c/R.INSTALL7c5447096ecb/Rarr/src/compression_tools/blosc/lib/lz4-1.9.2'
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -DNLZ4_DEBUG -c lz4.c
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -DNLZ4_DEBUG -c lz4hc.c
make[2]: Leaving directory '/f/biocbuild/bbs-3.22-bioc/tmpdir/RtmpErqd3c/R.INSTALL7c5447096ecb/Rarr/src/compression_tools/blosc/lib/lz4-1.9.2'
/usr/bin/make -C lib/blosc-1.20.1 all
make[2]: Entering directory '/f/biocbuild/bbs-3.22-bioc/tmpdir/RtmpErqd3c/R.INSTALL7c5447096ecb/Rarr/src/compression_tools/blosc/lib/blosc-1.20.1'
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c bitshuffle-sse2.c
bitshuffle-sse2.c: In function 'blosc_internal_bshuf_trans_byte_elem_sse2':
bitshuffle-sse2.c:260:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
260 | }
| ^
bitshuffle-sse2.c: In function 'blosc_internal_bshuf_trans_bit_elem_sse2':
bitshuffle-sse2.c:308:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
308 | }
| ^
bitshuffle-sse2.c: In function 'blosc_internal_bshuf_trans_byte_bitrow_sse2':
bitshuffle-sse2.c:414:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
414 | }
| ^
bitshuffle-sse2.c: In function 'blosc_internal_bshuf_shuffle_bit_eightelem_sse2':
bitshuffle-sse2.c:451:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
451 | }
| ^
bitshuffle-sse2.c: In function 'blosc_internal_bshuf_untrans_bit_elem_sse2':
bitshuffle-sse2.c:467:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
467 | }
| ^
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c shuffle-sse2.c
shuffle-sse2.c: In function 'blosc_internal_shuffle_sse2':
shuffle-sse2.c:568:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
568 | }
| ^
shuffle-sse2.c: In function 'blosc_internal_unshuffle_sse2':
shuffle-sse2.c:626:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
626 | }
| ^
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c bitshuffle-generic.c
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_remainder':
bitshuffle-generic.c:40:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
40 | }
| ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_scal':
bitshuffle-generic.c:48:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
48 | }
| ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_byte_remainder':
bitshuffle-generic.c:85:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
85 | }
| ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_elem':
bitshuffle-generic.c:109:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
109 | }
| ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bitrow_eight':
bitshuffle-generic.c:121:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
121 | }
| ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_elem_scal':
bitshuffle-generic.c:139:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
139 | }
| ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_shuffle_bit_eightelem_scal':
bitshuffle-generic.c:204:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
204 | }
| ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_untrans_bit_elem_scal':
bitshuffle-generic.c:220:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
220 | }
| ^
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c shuffle-generic.c
shuffle-generic.c: In function 'blosc_internal_shuffle_generic':
shuffle-generic.c:17:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
17 | }
| ^
shuffle-generic.c: In function 'blosc_internal_unshuffle_generic':
shuffle-generic.c:25:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
25 | }
| ^
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -DSHUFFLE_SSE2_ENABLED -c shuffle.c
In file included from shuffle.c:12:
shuffle-generic.h:61:13: warning: 'unshuffle_generic_inline' defined but not used [-Wunused-function]
61 | static void unshuffle_generic_inline(const size_t type_size,
| ^~~~~~~~~~~~~~~~~~~~~~~~
shuffle-generic.h:32:13: warning: 'shuffle_generic_inline' defined but not used [-Wunused-function]
32 | static void shuffle_generic_inline(const size_t type_size,
| ^~~~~~~~~~~~~~~~~~~~~~
shuffle.c: In function 'blosc_internal_shuffle':
shuffle.c:392:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
392 | }
| ^
shuffle.c: In function 'blosc_internal_unshuffle':
shuffle.c:405:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
405 | }
| ^
shuffle.c: In function 'blosc_internal_bitshuffle':
shuffle.c:432:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
432 | }
| ^
shuffle.c: In function 'blosc_internal_bitunshuffle':
shuffle.c:459:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
459 | }
| ^
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c blosclz.c
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c blosc.c
blosc.c:303:12: warning: 'compname_to_clibcode' defined but not used [-Wunused-function]
303 | static int compname_to_clibcode(const char *compname)
| ^~~~~~~~~~~~~~~~~~~~
blosc.c:156:16: warning: 'g_atfork_registered' defined but not used [-Wunused-variable]
156 | static int32_t g_atfork_registered = 0;
| ^~~~~~~~~~~~~~~~~~~
gcc -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.22-bioc/R/include -IF:/biocbuild/bbs-3.22-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c fastcopy.c
make[2]: Leaving directory '/f/biocbuild/bbs-3.22-bioc/tmpdir/RtmpErqd3c/R.INSTALL7c5447096ecb/Rarr/src/compression_tools/blosc/lib/blosc-1.20.1'
rm -f libblosc.a
ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/shuffle-sse2.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/bitshuffle-sse2.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.2/lz4.o lib/lz4-1.9.2/lz4hc.o
ranlib libblosc.a
make[1]: Leaving directory '/f/biocbuild/bbs-3.22-bioc/tmpdir/RtmpErqd3c/R.INSTALL7c5447096ecb/Rarr/src/compression_tools/blosc'
gcc -shared -s -static-libgcc -o Rarr.dll tmp.def Rarr.o bit64_conversion.o compress.o decompress.o float16_conversion.o type_conversion.o compression_tools/blosc/libblosc.a compression_tools/zstd/libzstd.a -lz -lstdc++ -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.22-bioc/meat/Rarr.buildbin-libdir/00LOCK-Rarr/00new/Rarr/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Rarr' as Rarr_1.9.0.zip
* DONE (Rarr)