| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-11-20 12:06 -0500 (Thu, 20 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4615 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble" | 4610 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4598 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1378/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MsBackendRawFileReader 1.16.0 (landing page) Christian Panse
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the MsBackendRawFileReader package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsBackendRawFileReader.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MsBackendRawFileReader |
| Version: 1.16.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendRawFileReader |
| StartedAt: 2025-11-17 23:07:21 -0500 (Mon, 17 Nov 2025) |
| EndedAt: 2025-11-17 23:07:40 -0500 (Mon, 17 Nov 2025) |
| EllapsedTime: 19.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendRawFileReader
###
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* checking for file ‘MsBackendRawFileReader/DESCRIPTION’ ... OK
* preparing ‘MsBackendRawFileReader’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MsBackendRawFileReader.Rmd’ using rmarkdown
trying URL 'https://fgcz-ms.uzh.ch/~cpanse/rawrr/dotnet/1.17.2//osx-x64/rawrr'
Content type 'unknown' length 116996414 bytes (111.6 MB)
==================================================
downloaded 111.6 MB
sh: /Users/biocbuild/Library/Caches/org.R-project.R/R/rawrr/rawrrassembly/osx-x64/rawrr: Bad CPU type in executable
sh: /Users/biocbuild/Library/Caches/org.R-project.R/R/rawrr/rawrrassembly/osx-x64/rawrr: Bad CPU type in executable
sh: /Users/biocbuild/Library/Caches/org.R-project.R/R/rawrr/rawrrassembly/osx-x64/rawrr: Bad CPU type in executable
Quitting from MsBackendRawFileReader.Rmd:103-107 [backendInitializeMsBackendRawFileReader]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
3 remote errors, element index: 1, 2, 3
0 unevaluated and other errors
first remote error:
Error in if (rvs != "No RAW file specified!") {: argument is of length zero
---
Backtrace:
▆
1. ├─Spectra::backendInitialize(...)
2. └─Spectra::backendInitialize(...)
3. └─MsBackendRawFileReader (local) .local(object, ...)
4. ├─base::do.call(...)
5. ├─BiocParallel::bplapply(...)
6. └─BiocParallel::bplapply(...)
7. └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MsBackendRawFileReader.Rmd' failed with diagnostics:
BiocParallel errors
3 remote errors, element index: 1, 2, 3
0 unevaluated and other errors
first remote error:
Error in if (rvs != "No RAW file specified!") {: argument is of length zero
--- failed re-building ‘MsBackendRawFileReader.Rmd’
SUMMARY: processing the following file failed:
‘MsBackendRawFileReader.Rmd’
Error: Vignette re-building failed.
Execution halted