| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-22 12:04 -0500 (Mon, 22 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4883 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4673 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4607 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 523/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DAPAR 1.42.0 (landing page) Samuel Wieczorek
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the DAPAR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DAPAR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DAPAR |
| Version: 1.42.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DAPAR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DAPAR_1.42.0.tar.gz |
| StartedAt: 2025-12-19 02:58:06 -0500 (Fri, 19 Dec 2025) |
| EndedAt: 2025-12-19 03:17:35 -0500 (Fri, 19 Dec 2025) |
| EllapsedTime: 1169.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DAPAR.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DAPAR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DAPAR_1.42.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/DAPAR.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DAPAR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DAPAR’ version ‘1.42.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Vignette dependency required without any vignettes: ‘knitr’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAPAR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Check_Dataset_Validity: no visible global function definition for
‘exprs’
OWAnova: no visible global function definition for ‘aov’
aggregateIterParallel: no visible binding for global variable ‘cond’
averageIntensities: no visible binding for global variable ‘condition’
averageIntensities: no visible binding for global variable ‘feature’
averageIntensities: no visible binding for global variable ‘intensity’
createMSnset: no visible global function definition for
‘installed.packages’
createMSnset: no visible binding for global variable ‘Prostar.loc’
createMSnset2: no visible global function definition for
‘installed.packages’
createMSnset2: no visible binding for global variable ‘Prostar.loc’
diffAnaVolcanoplot_rCharts: no visible binding for global variable ‘x’
diffAnaVolcanoplot_rCharts: no visible binding for global variable ‘y’
diffAnaVolcanoplot_rCharts: no visible binding for global variable ‘g’
display.CC.visNet: no visible binding for global variable
‘layout_nicely’
getTextForGOAnalysis: no visible binding for global variable
‘textGOParams’
getTextForGOAnalysis: no visible binding for global variable ‘input’
globalAdjPval: no visible global function definition for ‘stack’
heatmapForMissingValues: no visible binding for global variable ‘par’
limmaCompleteTest: no visible binding for global variable ‘A’
limmaCompleteTest: no visible binding for global variable ‘B’
limmaCompleteTest: no visible binding for global variable ‘P.Value’
pepa.test: no visible global function definition for ‘nodes<-’
testAnovaModels : <anonymous>: no visible global function definition
for ‘TukeyHSD’
visualizeClusters: no visible binding for global variable
‘adjusted_pvalues’
visualizeClusters: no visible binding for global variable ‘Condition’
visualizeClusters: no visible binding for global variable ‘Intensity’
visualizeClusters: no visible binding for global variable
‘FDR_threshold’
visualizeClusters: no visible binding for global variable ‘feature’
wrapperClassic1wayAnova: no visible binding for global variable
‘Pr(>F)1’
wrapperRunClustering: no visible global function definition for ‘str_c’
Undefined global functions or variables:
A B Condition FDR_threshold Intensity P.Value Pr(>F)1 Prostar.loc
TukeyHSD adjusted_pvalues aov cond condition exprs feature g input
installed.packages intensity layout_nicely nodes<- par stack str_c
textGOParams x y
Consider adding
importFrom("graphics", "par")
importFrom("stats", "TukeyHSD", "aov")
importFrom("utils", "installed.packages", "stack")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
wrapper.compareNormalizationD_HC 105.625 50.687 158.412
wrapper.dapar.impute.mi 30.697 1.819 33.612
barplotEnrichGO_HC 15.059 2.746 20.009
barplotGroupGO_HC 8.876 1.115 11.490
scatterplotEnrichGO_HC 8.700 1.101 10.302
checkClusterability 6.251 3.486 10.682
enrich_GO 8.504 1.018 11.031
group_GO 8.480 0.993 10.478
densityPlotD_HC 6.408 2.488 9.731
wrapper.CVDistD_HC 4.773 2.154 6.755
CVDistD_HC 6.268 0.436 6.975
mvImage 5.989 0.357 7.417
wrapperRunClustering 4.965 0.758 6.092
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.22-bioc/meat/DAPAR.Rcheck/00check.log’
for details.
DAPAR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DAPAR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘DAPAR’ ... ** this is package ‘DAPAR’ version ‘1.42.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DAPAR)
DAPAR.Rcheck/tests/testthat.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(DAPAR)
This is the 'DAPAR' version 1.42.0.
To get started, visit
http://www.prostar-proteomics.org/
>
> test_check("DAPAR")
Iterations:
1 / 1 - Imputation MNAR OK -
Imputation MCAR in progress -
3 % - 6 % - 9 % - 12 % - 15 % - 18 % - 21 % - 24 % - 27 % - 30 % - 33 % - 36 % - 39 % - 42 % - 45 % - 48 % - 51 % - 54 % - 57 % - 60 % - 63 % - 66 % - 69 % - 72 % - 75 % - 78 % - 81 % - 84 % - 87 % - 90 % - 93 % - 96 % - 99 % -
Iterations:
1 / 1 - Imputation MNAR OK -
Imputation MCAR in progress -
3 % - 6 % - 9 % - 12 % - 15 % - 18 % - 21 % - 24 % - 27 % - 30 % - 33 % - 36 % - 39 % - 42 % - 45 % - 48 % - 51 % - 54 % - 57 % - 60 % - 63 % - 66 % - 69 % - 72 % - 75 % - 78 % - 81 % - 84 % - 87 % - 90 % - 93 % - 96 % - 99 % -
Imputation in condition 1 ...
In progress: 10 % - 20 % - 30 % - 40 % - 50 % - 60 % - 70 % - 80 % - 90 % - 100 % -
Imputation in condition 2 ...
In progress: 10 % - 20 % - 30 % - 40 % - 50 % - 60 % - 70 % - 80 % - 90 % - 100 % - [ FAIL 0 | WARN 17 | SKIP 9 | PASS 66 ]
══ Skipped tests (9) ═══════════════════════════════════════════════════════════
• empty test (9): , , , , , , , ,
[ FAIL 0 | WARN 17 | SKIP 9 | PASS 66 ]
>
> proc.time()
user system elapsed
68.568 2.475 76.289
DAPAR.Rcheck/DAPAR-Ex.timings
| name | user | system | elapsed | |
| AggregateMetacell | 1.067 | 0.036 | 1.181 | |
| BuildAdjacencyMatrix | 0.875 | 0.016 | 0.953 | |
| BuildColumnToProteinDataset | 1.108 | 0.021 | 1.216 | |
| BuildMetaCell | 1.998 | 0.040 | 2.124 | |
| CVDistD_HC | 6.268 | 0.436 | 6.975 | |
| Children | 0.012 | 0.001 | 0.014 | |
| CountPep | 0.939 | 0.015 | 1.033 | |
| ExtendPalette | 0.056 | 0.003 | 0.064 | |
| GOAnalysisSave | 0.001 | 0.000 | 0.001 | |
| GetCC | 3.246 | 0.049 | 3.614 | |
| GetColorsForConditions | 0.824 | 0.011 | 0.885 | |
| GetDetailedNbPeptides | 0.878 | 0.015 | 1.124 | |
| GetDetailedNbPeptidesUsed | 0.000 | 0.001 | 0.001 | |
| GetIndices_BasedOnConditions | 0.864 | 0.014 | 0.911 | |
| GetIndices_MetacellFiltering | 0.878 | 0.015 | 0.949 | |
| GetIndices_WholeLine | 0.865 | 0.014 | 0.917 | |
| GetIndices_WholeMatrix | 0.867 | 0.014 | 0.919 | |
| GetKeyId | 0.834 | 0.015 | 0.885 | |
| GetMatAdj | 0.966 | 0.015 | 1.029 | |
| GetMetacell | 0.001 | 0.000 | 0.000 | |
| GetMetacellTags | 0.863 | 0.017 | 0.947 | |
| GetNbPeptidesUsed | 0.869 | 0.015 | 0.890 | |
| GetNbTags | 0.000 | 0.001 | 0.001 | |
| GetSoftAvailables | 0.001 | 0.000 | 0.001 | |
| GetTypeofData | 0.830 | 0.015 | 0.854 | |
| Get_AllComparisons | 0.526 | 0.023 | 0.555 | |
| GlobalQuantileAlignment | 0.851 | 0.012 | 0.868 | |
| GraphPepProt | 0.869 | 0.014 | 0.887 | |
| LH0 | 0.000 | 0.001 | 0.000 | |
| LH0.lm | 0.000 | 0.001 | 0.000 | |
| LH1 | 0.000 | 0.001 | 0.001 | |
| LH1.lm | 0.000 | 0.001 | 0.000 | |
| LOESS | 2.028 | 0.032 | 2.097 | |
| MeanCentering | 0.872 | 0.025 | 0.900 | |
| MetaCellFiltering | 1.225 | 0.016 | 1.293 | |
| MetacellFilteringScope | 0.000 | 0.001 | 0.001 | |
| Metacell_DIA_NN | 0.868 | 0.019 | 0.896 | |
| Metacell_generic | 0.769 | 0.019 | 0.854 | |
| Metacell_maxquant | 0.833 | 0.023 | 0.893 | |
| Metacell_proline | 0.775 | 0.019 | 0.835 | |
| NumericalFiltering | 0.932 | 0.015 | 0.996 | |
| NumericalgetIndicesOfLinesToRemove | 0.848 | 0.013 | 0.900 | |
| OWAnova | 0.011 | 0.001 | 0.013 | |
| QuantileCentering | 0.900 | 0.022 | 0.961 | |
| SetCC | 2.912 | 0.020 | 3.072 | |
| SetMatAdj | 0.943 | 0.013 | 0.998 | |
| Set_POV_MEC_tags | 0.867 | 0.014 | 0.965 | |
| StringBasedFiltering | 0.921 | 0.015 | 1.015 | |
| StringBasedFiltering2 | 0.909 | 0.013 | 1.004 | |
| SumByColumns | 3.678 | 0.078 | 3.943 | |
| SymFilteringOperators | 0 | 0 | 0 | |
| UpdateMetacellAfterImputation | 0.876 | 0.014 | 0.931 | |
| aggregateIter | 1.224 | 0.016 | 1.286 | |
| aggregateIterParallel | 0.001 | 0.001 | 0.001 | |
| aggregateMean | 1.045 | 0.015 | 1.111 | |
| aggregateSum | 1.111 | 0.014 | 1.182 | |
| aggregateTopn | 1.011 | 0.014 | 1.064 | |
| applyAnovasOnProteins | 0.238 | 0.008 | 0.253 | |
| averageIntensities | 1.121 | 0.207 | 1.464 | |
| barplotEnrichGO_HC | 15.059 | 2.746 | 20.009 | |
| barplotGroupGO_HC | 8.876 | 1.115 | 11.490 | |
| boxPlotD_HC | 0.510 | 0.150 | 0.869 | |
| buildGraph | 2.205 | 0.067 | 2.458 | |
| check.conditions | 0.815 | 0.013 | 0.880 | |
| check.design | 0.821 | 0.013 | 0.871 | |
| checkClusterability | 6.251 | 3.486 | 10.682 | |
| classic1wayAnova | 0 | 0 | 0 | |
| compareNormalizationD_HC | 0.311 | 0.101 | 0.478 | |
| compute.selection.table | 1.522 | 0.250 | 2.174 | |
| compute_t_tests | 2.552 | 0.321 | 3.508 | |
| corrMatrixD_HC | 1.019 | 0.126 | 1.250 | |
| createMSnset | 3.290 | 0.157 | 3.822 | |
| createMSnset2 | 3.214 | 0.149 | 3.731 | |
| dapar_hc_ExportMenu | 0.285 | 0.252 | 0.643 | |
| dapar_hc_chart | 0.115 | 0.086 | 0.243 | |
| deleteLinesFromIndices | 0.958 | 0.042 | 1.047 | |
| densityPlotD_HC | 6.408 | 2.488 | 9.731 | |
| diffAnaComputeAdjustedPValues | 0.352 | 0.074 | 0.425 | |
| diffAnaComputeFDR | 0.000 | 0.001 | 0.000 | |
| diffAnaGetSignificant | 0.550 | 0.104 | 0.656 | |
| diffAnaSave | 0.498 | 0.105 | 0.603 | |
| diffAnaVolcanoplot | 0.350 | 0.055 | 0.406 | |
| diffAnaVolcanoplot_rCharts | 0.759 | 0.232 | 1.009 | |
| display.CC.visNet | 2.424 | 0.147 | 2.662 | |
| enrich_GO | 8.504 | 1.018 | 11.031 | |
| finalizeAggregation | 0.001 | 0.000 | 0.000 | |
| findMECBlock | 0.904 | 0.026 | 1.013 | |
| formatHSDResults | 0.000 | 0.001 | 0.001 | |
| formatLimmaResult | 0.316 | 0.044 | 0.388 | |
| formatPHResults | 0.000 | 0.001 | 0.000 | |
| formatPHTResults | 0.000 | 0.001 | 0.001 | |
| fudge2LRT | 0.000 | 0.000 | 0.001 | |
| get.pep.prot.cc | 2.153 | 0.043 | 2.266 | |
| getDesignLevel | 0.813 | 0.012 | 0.874 | |
| getIndicesConditions | 0.811 | 0.013 | 0.870 | |
| getIndicesOfLinesToRemove | 0.860 | 0.026 | 0.994 | |
| getListNbValuesInLines | 0.809 | 0.011 | 0.870 | |
| getNumberOf | 0.862 | 0.026 | 1.003 | |
| getNumberOfEmptyLines | 0.884 | 0.017 | 0.928 | |
| getPourcentageOfMV | 0.842 | 0.020 | 0.872 | |
| getProcessingInfo | 0.813 | 0.012 | 0.868 | |
| getProteinsStats | 0.870 | 0.029 | 0.951 | |
| getQuantile4Imp | 0.186 | 0.009 | 0.214 | |
| getTextForAggregation | 0.001 | 0.000 | 0.001 | |
| getTextForAnaDiff | 0.000 | 0.000 | 0.001 | |
| getTextForFiltering | 0.001 | 0.001 | 0.001 | |
| getTextForGOAnalysis | 0.000 | 0.001 | 0.001 | |
| getTextForHypothesisTest | 0.001 | 0.000 | 0.001 | |
| getTextForNewDataset | 0.004 | 0.001 | 0.005 | |
| getTextForNormalization | 0.000 | 0.001 | 0.001 | |
| getTextForpeptideImputation | 0.001 | 0.000 | 0.001 | |
| getTextForproteinImputation | 0.001 | 0.000 | 0.001 | |
| globalAdjPval | 0.926 | 0.099 | 1.089 | |
| group_GO | 8.480 | 0.993 | 10.478 | |
| hc_logFC_DensityPlot | 1.264 | 0.508 | 1.798 | |
| hc_mvTypePlot2 | 1.929 | 0.477 | 2.747 | |
| heatmapD | 1.348 | 0.101 | 1.615 | |
| heatmapForMissingValues | 0.344 | 0.042 | 0.447 | |
| histPValue_HC | 0.452 | 0.135 | 0.696 | |
| impute.pa2 | 0.933 | 0.042 | 1.041 | |
| inner.aggregate.iter | 1.094 | 0.055 | 1.250 | |
| inner.aggregate.topn | 0.906 | 0.030 | 1.040 | |
| inner.mean | 0.889 | 0.031 | 1.072 | |
| inner.sum | 0.895 | 0.029 | 1.044 | |
| is.subset | 0.002 | 0.001 | 0.002 | |
| limmaCompleteTest | 3.650 | 0.115 | 4.352 | |
| listSheets | 0.000 | 0.000 | 0.001 | |
| make.contrast | 0.844 | 0.014 | 0.903 | |
| make.design.1 | 0.843 | 0.014 | 0.915 | |
| make.design.2 | 0.841 | 0.015 | 0.896 | |
| make.design.3 | 0.841 | 0.015 | 0.902 | |
| make.design | 0.840 | 0.013 | 0.906 | |
| match.metacell | 0.894 | 0.028 | 1.042 | |
| metacell.def | 0.011 | 0.004 | 0.016 | |
| metacellHisto_HC | 0.953 | 0.100 | 1.216 | |
| metacellPerLinesHistoPerCondition_HC | 1.227 | 0.200 | 1.648 | |
| metacellPerLinesHisto_HC | 1.442 | 0.469 | 2.238 | |
| metacombine | 0.491 | 0.031 | 0.627 | |
| mvImage | 5.989 | 0.357 | 7.417 | |
| my_hc_ExportMenu | 0.284 | 0.264 | 0.684 | |
| my_hc_chart | 0.277 | 0.252 | 0.620 | |
| nonzero | 0.028 | 0.003 | 0.034 | |
| normalizeMethods.dapar | 0.001 | 0.000 | 0.001 | |
| pepa.test | 0.903 | 0.040 | 1.057 | |
| pkgs.require | 0.000 | 0.001 | 0.000 | |
| plotJitter | 2.270 | 0.092 | 2.635 | |
| plotJitter_rCharts | 2.264 | 0.164 | 2.769 | |
| plotPCA_Eigen | 1.019 | 0.087 | 1.287 | |
| plotPCA_Eigen_hc | 0.822 | 0.023 | 0.905 | |
| plotPCA_Ind | 0.838 | 0.028 | 0.947 | |
| plotPCA_Var | 0.814 | 0.023 | 0.901 | |
| postHocTest | 0.000 | 0.000 | 0.001 | |
| proportionConRev_HC | 0.102 | 0.089 | 0.255 | |
| rbindMSnset | 1.040 | 0.090 | 1.318 | |
| reIntroduceMEC | 0.972 | 0.058 | 1.172 | |
| readExcel | 0.001 | 0.000 | 0.001 | |
| removeLines | 0.921 | 0.059 | 1.113 | |
| samLRT | 0.000 | 0.000 | 0.001 | |
| saveParameters | 0.827 | 0.026 | 0.924 | |
| scatterplotEnrichGO_HC | 8.700 | 1.101 | 10.302 | |
| search.metacell.tags | 0.016 | 0.005 | 0.022 | |
| separateAdjPval | 0.336 | 0.029 | 0.365 | |
| splitAdjacencyMat | 0.897 | 0.024 | 0.923 | |
| test.design | 0.927 | 0.017 | 0.958 | |
| testAnovaModels | 0.254 | 0.026 | 0.286 | |
| thresholdpval4fdr | 0.000 | 0.000 | 0.001 | |
| translatedRandomBeta | 0.006 | 0.026 | 0.033 | |
| univ_AnnotDbPkg | 0.320 | 0.182 | 0.504 | |
| violinPlotD | 0.514 | 0.035 | 0.552 | |
| visualizeClusters | 2.966 | 0.413 | 3.386 | |
| vsn | 1.345 | 0.037 | 1.433 | |
| wrapper.CVDistD_HC | 4.773 | 2.154 | 6.755 | |
| wrapper.compareNormalizationD_HC | 105.625 | 50.687 | 158.412 | |
| wrapper.corrMatrixD_HC | 1.064 | 0.132 | 1.213 | |
| wrapper.dapar.impute.mi | 30.697 | 1.819 | 33.612 | |
| wrapper.heatmapD | 1.198 | 0.074 | 1.423 | |
| wrapper.impute.KNN | 0.916 | 0.039 | 1.048 | |
| wrapper.impute.detQuant | 0.997 | 0.061 | 1.189 | |
| wrapper.impute.fixedValue | 1.048 | 0.081 | 1.263 | |
| wrapper.impute.mle | 0.910 | 0.039 | 1.048 | |
| wrapper.impute.pa | 0.297 | 0.037 | 0.398 | |
| wrapper.impute.pa2 | 0.930 | 0.051 | 1.106 | |
| wrapper.impute.slsa | 1.268 | 0.086 | 1.491 | |
| wrapper.mvImage | 0.336 | 0.050 | 0.454 | |
| wrapper.normalizeD | 0.846 | 0.016 | 0.890 | |
| wrapper.pca | 0.328 | 0.049 | 0.468 | |
| wrapperCalibrationPlot | 0.391 | 0.059 | 0.592 | |
| wrapperClassic1wayAnova | 0.000 | 0.001 | 0.001 | |
| wrapperRunClustering | 4.965 | 0.758 | 6.092 | |
| write.excel | 1.664 | 0.254 | 1.958 | |
| writeMSnsetToCSV | 0.876 | 0.039 | 0.959 | |
| writeMSnsetToExcel | 2.168 | 0.399 | 2.998 | |