| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-09 11:40:57 -0400 (Thu, 09 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4748 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4484 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4514 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: HPiP |
| Version: 1.10.0 |
| Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings HPiP_1.10.0.tar.gz |
| StartedAt: 2024-05-09 08:24:46 -0000 (Thu, 09 May 2024) |
| EndedAt: 2024-05-09 08:30:54 -0000 (Thu, 09 May 2024) |
| EllapsedTime: 367.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings HPiP_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 40.361 0.766 41.207
FSmethod 38.130 0.615 38.827
corr_plot 38.266 0.412 38.758
pred_ensembel 18.673 0.301 16.620
enrichfindP 0.524 0.028 29.054
getFASTA 0.086 0.008 14.316
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 110.004492
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 93.230158
iter 10 value 85.267561
iter 20 value 84.363772
final value 84.363399
converged
Fitting Repeat 3
# weights: 103
initial value 94.652439
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 106.094979
final value 94.291892
converged
Fitting Repeat 5
# weights: 103
initial value 95.367261
iter 10 value 94.481316
iter 20 value 93.615420
final value 93.611986
converged
Fitting Repeat 1
# weights: 305
initial value 107.144715
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 96.209408
final value 94.291892
converged
Fitting Repeat 3
# weights: 305
initial value 110.221583
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 105.010319
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 108.848635
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 100.885163
iter 10 value 94.242106
iter 10 value 94.242106
iter 10 value 94.242106
final value 94.242106
converged
Fitting Repeat 2
# weights: 507
initial value 97.803639
final value 94.291892
converged
Fitting Repeat 3
# weights: 507
initial value 102.787424
iter 10 value 94.040795
iter 20 value 92.272566
iter 30 value 92.007859
iter 40 value 91.973777
iter 50 value 91.893993
final value 91.893524
converged
Fitting Repeat 4
# weights: 507
initial value 95.985574
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 95.565360
iter 10 value 88.502314
iter 20 value 87.976148
final value 87.953872
converged
Fitting Repeat 1
# weights: 103
initial value 104.134947
iter 10 value 94.488600
iter 20 value 93.162095
iter 30 value 87.395700
iter 40 value 86.163243
iter 50 value 85.300751
iter 60 value 84.916582
iter 70 value 84.825157
final value 84.820871
converged
Fitting Repeat 2
# weights: 103
initial value 107.192908
iter 10 value 94.392319
iter 20 value 91.940246
iter 30 value 87.174402
iter 40 value 86.198715
iter 50 value 85.314028
iter 60 value 84.457302
iter 70 value 83.776839
iter 80 value 83.404098
iter 90 value 83.336738
final value 83.330640
converged
Fitting Repeat 3
# weights: 103
initial value 98.104058
iter 10 value 94.500957
iter 20 value 94.479703
iter 30 value 92.985424
iter 40 value 88.101567
iter 50 value 86.595665
iter 60 value 85.851576
iter 70 value 85.514956
iter 80 value 85.504950
final value 85.504943
converged
Fitting Repeat 4
# weights: 103
initial value 108.110017
iter 10 value 94.294015
iter 20 value 92.342824
iter 30 value 91.769179
iter 40 value 90.662221
iter 50 value 86.570593
iter 60 value 84.962741
iter 70 value 84.299555
iter 80 value 83.525574
iter 90 value 83.331836
final value 83.330640
converged
Fitting Repeat 5
# weights: 103
initial value 105.815374
iter 10 value 94.520903
iter 20 value 94.428218
iter 30 value 90.425952
iter 40 value 87.781357
iter 50 value 86.782903
iter 60 value 86.384987
iter 70 value 86.045191
iter 80 value 85.906243
iter 90 value 85.787966
final value 85.786923
converged
Fitting Repeat 1
# weights: 305
initial value 104.454405
iter 10 value 94.251899
iter 20 value 92.728483
iter 30 value 89.286694
iter 40 value 87.016481
iter 50 value 86.347281
iter 60 value 84.562129
iter 70 value 83.113568
iter 80 value 82.811643
iter 90 value 82.717598
iter 100 value 82.676937
final value 82.676937
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.316736
iter 10 value 94.488933
iter 20 value 92.626389
iter 30 value 88.116720
iter 40 value 87.288607
iter 50 value 86.016222
iter 60 value 84.698517
iter 70 value 83.799976
iter 80 value 83.671456
iter 90 value 83.485467
iter 100 value 83.100768
final value 83.100768
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.066508
iter 10 value 94.382988
iter 20 value 89.966002
iter 30 value 86.728095
iter 40 value 84.097881
iter 50 value 83.333168
iter 60 value 82.760768
iter 70 value 82.494263
iter 80 value 82.319268
iter 90 value 82.243140
iter 100 value 82.207250
final value 82.207250
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.671609
iter 10 value 94.499007
iter 20 value 92.583854
iter 30 value 89.915147
iter 40 value 86.352614
iter 50 value 85.336207
iter 60 value 84.965660
iter 70 value 84.796621
iter 80 value 84.372257
iter 90 value 84.247847
iter 100 value 84.198944
final value 84.198944
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.754843
iter 10 value 94.529697
iter 20 value 94.242506
iter 30 value 92.601951
iter 40 value 89.684350
iter 50 value 89.109227
iter 60 value 88.846927
iter 70 value 86.609173
iter 80 value 84.427912
iter 90 value 83.974413
iter 100 value 83.547753
final value 83.547753
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 130.694844
iter 10 value 94.383941
iter 20 value 86.955185
iter 30 value 86.026440
iter 40 value 84.240996
iter 50 value 83.775804
iter 60 value 83.206455
iter 70 value 82.761820
iter 80 value 82.701016
iter 90 value 82.497797
iter 100 value 82.307955
final value 82.307955
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 125.347449
iter 10 value 94.586076
iter 20 value 91.859936
iter 30 value 87.879340
iter 40 value 86.664478
iter 50 value 85.437582
iter 60 value 85.151282
iter 70 value 85.078635
iter 80 value 84.937257
iter 90 value 84.930486
iter 100 value 84.834822
final value 84.834822
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.195421
iter 10 value 94.444192
iter 20 value 90.497496
iter 30 value 86.391504
iter 40 value 85.575148
iter 50 value 84.525940
iter 60 value 83.927714
iter 70 value 83.142132
iter 80 value 83.088630
iter 90 value 82.942428
iter 100 value 82.552405
final value 82.552405
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.937548
iter 10 value 94.529570
iter 20 value 94.334571
iter 30 value 90.008842
iter 40 value 85.860412
iter 50 value 83.403823
iter 60 value 82.920270
iter 70 value 82.509484
iter 80 value 82.166939
iter 90 value 81.952343
iter 100 value 81.858886
final value 81.858886
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.965572
iter 10 value 94.724860
iter 20 value 87.837644
iter 30 value 86.849862
iter 40 value 84.155487
iter 50 value 83.565602
iter 60 value 82.564387
iter 70 value 82.278767
iter 80 value 82.192892
iter 90 value 82.129336
iter 100 value 82.079220
final value 82.079220
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.956180
final value 94.485814
converged
Fitting Repeat 2
# weights: 103
initial value 96.280582
iter 10 value 88.209405
iter 20 value 87.255006
final value 87.254852
converged
Fitting Repeat 3
# weights: 103
initial value 98.661296
iter 10 value 94.485980
iter 20 value 94.483558
iter 30 value 88.680227
iter 40 value 88.448707
iter 50 value 85.939615
iter 60 value 85.745622
iter 70 value 85.627821
iter 80 value 85.622050
iter 90 value 85.360463
iter 90 value 85.360462
final value 85.360457
converged
Fitting Repeat 4
# weights: 103
initial value 97.040100
final value 94.485716
converged
Fitting Repeat 5
# weights: 103
initial value 106.890811
final value 94.485956
converged
Fitting Repeat 1
# weights: 305
initial value 96.306405
iter 10 value 94.488596
iter 20 value 94.477471
final value 94.292044
converged
Fitting Repeat 2
# weights: 305
initial value 103.132445
iter 10 value 94.530798
iter 20 value 94.497115
iter 30 value 88.432287
iter 40 value 86.293170
iter 50 value 86.257097
iter 60 value 86.237326
iter 70 value 85.349983
iter 80 value 85.051427
iter 90 value 85.046984
iter 100 value 85.046453
final value 85.046453
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.353963
iter 10 value 94.489243
iter 20 value 94.418134
iter 30 value 86.141383
iter 40 value 85.419803
iter 50 value 85.034331
final value 84.999365
converged
Fitting Repeat 4
# weights: 305
initial value 103.765210
iter 10 value 94.467032
iter 20 value 87.263470
iter 30 value 87.167332
iter 40 value 87.069443
iter 50 value 86.617213
iter 60 value 86.602011
iter 70 value 86.601956
iter 80 value 86.601719
iter 90 value 86.601542
iter 90 value 86.601542
iter 90 value 86.601542
final value 86.601542
converged
Fitting Repeat 5
# weights: 305
initial value 104.041223
iter 10 value 94.491699
iter 20 value 88.966752
iter 30 value 85.806967
iter 40 value 85.703158
iter 50 value 85.696108
iter 60 value 84.669025
iter 70 value 84.409039
iter 80 value 84.383057
iter 90 value 84.381927
iter 100 value 84.377107
final value 84.377107
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 94.174313
iter 10 value 93.932068
iter 20 value 93.873672
iter 30 value 93.872267
iter 40 value 93.728269
iter 50 value 92.178615
iter 60 value 92.000480
iter 70 value 91.322520
iter 80 value 91.260992
final value 91.260771
converged
Fitting Repeat 2
# weights: 507
initial value 111.369684
iter 10 value 94.437362
iter 20 value 94.429902
iter 30 value 93.793261
iter 40 value 91.764120
iter 50 value 91.520627
iter 60 value 91.389031
iter 70 value 87.810995
iter 80 value 87.723680
iter 90 value 87.706883
iter 100 value 86.117027
final value 86.117027
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.092772
iter 10 value 94.299874
iter 20 value 94.292836
iter 30 value 90.955603
iter 40 value 88.339076
final value 88.335946
converged
Fitting Repeat 4
# weights: 507
initial value 110.088521
iter 10 value 94.493745
iter 20 value 94.485495
iter 30 value 93.886166
iter 40 value 92.828594
iter 50 value 92.798962
iter 60 value 92.798637
iter 70 value 92.798384
iter 80 value 92.798016
iter 90 value 92.618882
iter 100 value 92.548441
final value 92.548441
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.957617
iter 10 value 94.492325
iter 20 value 94.469622
iter 30 value 88.968816
iter 40 value 87.052842
iter 50 value 87.045575
iter 60 value 87.043384
final value 87.043357
converged
Fitting Repeat 1
# weights: 103
initial value 98.970715
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 94.949767
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 114.953761
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 102.530433
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 99.097169
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.163418
iter 10 value 88.967868
iter 20 value 86.301393
iter 30 value 86.300497
final value 86.300463
converged
Fitting Repeat 2
# weights: 305
initial value 118.580371
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 99.570693
iter 10 value 93.375684
iter 10 value 93.375684
iter 10 value 93.375684
final value 93.375684
converged
Fitting Repeat 4
# weights: 305
initial value 130.535135
iter 10 value 94.423530
iter 10 value 94.423529
iter 10 value 94.423529
final value 94.423529
converged
Fitting Repeat 5
# weights: 305
initial value 95.223054
iter 10 value 94.484219
final value 94.484212
converged
Fitting Repeat 1
# weights: 507
initial value 114.462662
iter 10 value 87.174944
iter 20 value 84.639566
iter 30 value 84.019469
iter 40 value 83.992948
final value 83.992913
converged
Fitting Repeat 2
# weights: 507
initial value 111.044084
iter 10 value 90.022914
iter 20 value 89.908125
iter 30 value 89.008173
iter 40 value 89.005861
final value 89.005856
converged
Fitting Repeat 3
# weights: 507
initial value 109.873961
iter 10 value 92.331692
iter 20 value 89.116424
iter 30 value 88.894611
iter 40 value 88.893651
final value 88.893647
converged
Fitting Repeat 4
# weights: 507
initial value 95.320139
iter 10 value 93.373169
final value 93.372595
converged
Fitting Repeat 5
# weights: 507
initial value 94.539356
iter 10 value 89.988282
final value 89.988263
converged
Fitting Repeat 1
# weights: 103
initial value 102.442379
iter 10 value 94.453477
iter 20 value 83.644059
iter 30 value 83.175950
iter 40 value 82.890118
iter 50 value 82.675011
iter 60 value 80.587831
iter 70 value 80.307392
iter 80 value 80.279656
final value 80.270362
converged
Fitting Repeat 2
# weights: 103
initial value 96.868830
iter 10 value 94.488041
iter 20 value 90.872072
iter 30 value 89.283351
iter 40 value 87.238974
iter 50 value 84.865275
iter 60 value 82.298974
iter 70 value 81.948436
iter 80 value 81.649001
iter 90 value 81.638476
iter 90 value 81.638476
iter 90 value 81.638476
final value 81.638476
converged
Fitting Repeat 3
# weights: 103
initial value 101.542372
iter 10 value 94.486642
iter 20 value 87.133566
iter 30 value 85.744209
iter 40 value 84.638973
iter 50 value 82.203519
iter 60 value 80.128899
iter 70 value 78.720883
iter 80 value 78.708040
iter 90 value 78.704822
iter 100 value 78.704755
final value 78.704755
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 108.523862
iter 10 value 94.491331
iter 20 value 90.037004
iter 30 value 85.339216
iter 40 value 85.047096
iter 50 value 82.605109
iter 60 value 81.628554
iter 70 value 81.493237
final value 81.492237
converged
Fitting Repeat 5
# weights: 103
initial value 106.854359
iter 10 value 94.209692
iter 20 value 86.210608
iter 30 value 83.287971
iter 40 value 82.835353
iter 50 value 82.206302
iter 60 value 81.727497
iter 70 value 81.638476
iter 70 value 81.638476
iter 70 value 81.638476
final value 81.638476
converged
Fitting Repeat 1
# weights: 305
initial value 127.025624
iter 10 value 94.498033
iter 20 value 86.232514
iter 30 value 85.802554
iter 40 value 84.052649
iter 50 value 82.338907
iter 60 value 79.729385
iter 70 value 79.385494
iter 80 value 78.526387
iter 90 value 77.447860
iter 100 value 77.308449
final value 77.308449
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 120.938988
iter 10 value 96.612580
iter 20 value 95.036932
iter 30 value 89.428992
iter 40 value 83.805582
iter 50 value 83.272225
iter 60 value 82.837363
iter 70 value 82.180142
iter 80 value 81.884306
iter 90 value 80.343786
iter 100 value 78.577566
final value 78.577566
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 118.698347
iter 10 value 94.575968
iter 20 value 92.061626
iter 30 value 90.381847
iter 40 value 90.199622
iter 50 value 81.261225
iter 60 value 80.140262
iter 70 value 80.098200
iter 80 value 79.073116
iter 90 value 78.669711
iter 100 value 77.665037
final value 77.665037
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.916524
iter 10 value 94.557091
iter 20 value 94.488199
iter 30 value 93.653080
iter 40 value 92.430722
iter 50 value 83.870053
iter 60 value 82.481612
iter 70 value 81.734495
iter 80 value 81.618860
iter 90 value 81.303905
iter 100 value 81.163950
final value 81.163950
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 113.257620
iter 10 value 93.973390
iter 20 value 90.692995
iter 30 value 85.787737
iter 40 value 83.288508
iter 50 value 80.175739
iter 60 value 78.213461
iter 70 value 77.958071
iter 80 value 77.782685
iter 90 value 77.623326
iter 100 value 77.382861
final value 77.382861
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.004021
iter 10 value 93.453591
iter 20 value 84.448339
iter 30 value 83.578219
iter 40 value 82.810779
iter 50 value 82.598784
iter 60 value 80.910279
iter 70 value 80.276028
iter 80 value 79.843784
iter 90 value 78.039114
iter 100 value 77.371272
final value 77.371272
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.264305
iter 10 value 94.404900
iter 20 value 93.771353
iter 30 value 87.827774
iter 40 value 85.974324
iter 50 value 85.563545
iter 60 value 84.444369
iter 70 value 82.465711
iter 80 value 82.039094
iter 90 value 80.013857
iter 100 value 78.536219
final value 78.536219
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.647695
iter 10 value 94.622743
iter 20 value 83.408596
iter 30 value 82.585394
iter 40 value 79.818791
iter 50 value 78.387323
iter 60 value 77.828191
iter 70 value 77.459903
iter 80 value 77.347710
iter 90 value 77.286349
iter 100 value 77.146885
final value 77.146885
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.412955
iter 10 value 94.477274
iter 20 value 94.200288
iter 30 value 93.442322
iter 40 value 88.873013
iter 50 value 84.099670
iter 60 value 80.466607
iter 70 value 79.996825
iter 80 value 78.843700
iter 90 value 77.898451
iter 100 value 77.583508
final value 77.583508
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.812027
iter 10 value 94.528081
iter 20 value 92.950492
iter 30 value 90.826646
iter 40 value 83.206581
iter 50 value 81.972885
iter 60 value 80.462242
iter 70 value 78.863350
iter 80 value 78.328075
iter 90 value 77.804950
iter 100 value 77.440107
final value 77.440107
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.745741
final value 94.485843
converged
Fitting Repeat 2
# weights: 103
initial value 98.419833
final value 94.485503
converged
Fitting Repeat 3
# weights: 103
initial value 103.529514
final value 94.485725
converged
Fitting Repeat 4
# weights: 103
initial value 101.727478
final value 94.486045
converged
Fitting Repeat 5
# weights: 103
initial value 106.922464
iter 10 value 94.485774
iter 20 value 93.947313
iter 30 value 93.406083
iter 40 value 93.365268
iter 50 value 93.365105
final value 93.365103
converged
Fitting Repeat 1
# weights: 305
initial value 104.912305
iter 10 value 94.489123
iter 20 value 94.484236
iter 30 value 92.873869
iter 40 value 91.210523
iter 50 value 85.064900
iter 60 value 82.801315
iter 70 value 82.786190
iter 80 value 82.780495
iter 90 value 82.444431
iter 100 value 82.071758
final value 82.071758
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.742191
iter 10 value 94.489107
iter 20 value 94.325898
iter 30 value 91.507729
iter 40 value 79.976928
iter 50 value 79.592696
iter 60 value 79.464781
iter 70 value 78.938882
iter 80 value 78.521071
iter 90 value 77.940958
iter 100 value 77.867234
final value 77.867234
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.530923
iter 10 value 94.489006
iter 20 value 94.234383
iter 30 value 82.460359
iter 40 value 79.308355
iter 50 value 78.553784
iter 60 value 77.979917
iter 70 value 77.955711
final value 77.955679
converged
Fitting Repeat 4
# weights: 305
initial value 100.878776
iter 10 value 94.471969
iter 20 value 94.131978
iter 30 value 83.737527
iter 40 value 81.455028
iter 50 value 81.428380
iter 60 value 81.423650
iter 60 value 81.423649
iter 60 value 81.423649
final value 81.423649
converged
Fitting Repeat 5
# weights: 305
initial value 113.887167
iter 10 value 94.488862
iter 20 value 94.310769
iter 30 value 85.122655
final value 85.122653
converged
Fitting Repeat 1
# weights: 507
initial value 97.848109
iter 10 value 93.463281
iter 20 value 93.206403
iter 30 value 93.204200
iter 40 value 93.200176
iter 50 value 93.199857
iter 60 value 93.199719
iter 70 value 93.081068
iter 80 value 81.673067
iter 90 value 80.720460
iter 100 value 80.719612
final value 80.719612
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 99.141444
iter 10 value 94.099017
iter 20 value 94.098021
iter 30 value 94.059632
iter 40 value 91.834926
iter 50 value 90.401675
iter 60 value 85.059180
iter 70 value 84.810668
iter 80 value 82.048487
iter 90 value 80.327629
iter 100 value 80.021279
final value 80.021279
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.186689
iter 10 value 94.492287
iter 20 value 94.269206
iter 30 value 91.963650
iter 40 value 91.962373
iter 50 value 90.429998
iter 60 value 90.420735
iter 70 value 90.416979
final value 90.415860
converged
Fitting Repeat 4
# weights: 507
initial value 101.395429
iter 10 value 86.100519
iter 20 value 86.042801
iter 30 value 84.667970
iter 40 value 84.218422
iter 50 value 84.206806
iter 60 value 83.960574
iter 70 value 83.957758
iter 80 value 83.933116
iter 90 value 83.932443
iter 90 value 83.932442
final value 83.932442
converged
Fitting Repeat 5
# weights: 507
initial value 104.574326
iter 10 value 85.754967
iter 20 value 85.658195
iter 30 value 85.655722
final value 85.652069
converged
Fitting Repeat 1
# weights: 103
initial value 106.725732
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 96.915200
final value 93.869755
converged
Fitting Repeat 3
# weights: 103
initial value 97.023499
final value 92.945355
converged
Fitting Repeat 4
# weights: 103
initial value 105.647942
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 94.255329
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 96.895976
iter 10 value 93.531367
final value 93.531283
converged
Fitting Repeat 2
# weights: 305
initial value 100.784566
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 98.521277
iter 10 value 92.945396
final value 92.945355
converged
Fitting Repeat 4
# weights: 305
initial value 101.951721
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 111.111831
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 101.624669
iter 10 value 94.052954
final value 94.052911
converged
Fitting Repeat 2
# weights: 507
initial value 124.942374
iter 10 value 92.945374
final value 92.945355
converged
Fitting Repeat 3
# weights: 507
initial value 112.904494
iter 10 value 92.945355
iter 10 value 92.945355
iter 10 value 92.945355
final value 92.945355
converged
Fitting Repeat 4
# weights: 507
initial value 103.298487
iter 10 value 94.099366
iter 20 value 93.592241
iter 30 value 91.253677
iter 40 value 91.252791
final value 91.252787
converged
Fitting Repeat 5
# weights: 507
initial value 114.126737
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 95.919323
iter 10 value 93.930464
iter 20 value 88.797971
iter 30 value 86.915059
iter 40 value 86.433648
iter 50 value 84.686812
iter 60 value 83.985319
iter 70 value 83.801158
final value 83.801120
converged
Fitting Repeat 2
# weights: 103
initial value 96.163115
iter 10 value 94.080807
iter 20 value 93.255918
iter 30 value 93.083313
iter 40 value 92.998152
iter 50 value 90.592739
iter 60 value 88.167597
iter 70 value 84.907880
iter 80 value 82.268105
iter 90 value 81.640310
iter 100 value 81.251025
final value 81.251025
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 99.250080
iter 10 value 93.231818
iter 20 value 91.002991
iter 30 value 85.671943
iter 40 value 84.529345
iter 50 value 84.124174
iter 60 value 83.791651
iter 70 value 83.527662
final value 83.519879
converged
Fitting Repeat 4
# weights: 103
initial value 95.645745
iter 10 value 86.483869
iter 20 value 84.731883
iter 30 value 83.636132
iter 40 value 83.284692
final value 83.281501
converged
Fitting Repeat 5
# weights: 103
initial value 96.839590
iter 10 value 94.056469
iter 20 value 84.057413
iter 30 value 82.992798
iter 40 value 82.465803
iter 50 value 81.496187
iter 60 value 80.929058
iter 70 value 80.588854
iter 80 value 80.295814
iter 90 value 80.286770
final value 80.275434
converged
Fitting Repeat 1
# weights: 305
initial value 103.212462
iter 10 value 93.593621
iter 20 value 92.055829
iter 30 value 87.248424
iter 40 value 85.906882
iter 50 value 84.853737
iter 60 value 82.083704
iter 70 value 80.329658
iter 80 value 79.839523
iter 90 value 78.953793
iter 100 value 78.681670
final value 78.681670
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.628542
iter 10 value 94.446292
iter 20 value 85.838935
iter 30 value 85.361185
iter 40 value 84.922931
iter 50 value 84.858943
iter 60 value 84.809982
iter 70 value 84.157664
iter 80 value 83.277948
iter 90 value 81.339330
iter 100 value 80.416095
final value 80.416095
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 120.706983
iter 10 value 96.677816
iter 20 value 90.910802
iter 30 value 89.722312
iter 40 value 89.261163
iter 50 value 83.357441
iter 60 value 83.046370
iter 70 value 82.831366
iter 80 value 82.474592
iter 90 value 81.164919
iter 100 value 80.076332
final value 80.076332
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.867752
iter 10 value 94.138156
iter 20 value 90.426054
iter 30 value 85.637831
iter 40 value 84.990536
iter 50 value 83.141378
iter 60 value 80.733014
iter 70 value 80.343648
iter 80 value 80.226807
iter 90 value 79.602780
iter 100 value 79.375786
final value 79.375786
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.649812
iter 10 value 94.046213
iter 20 value 93.128421
iter 30 value 92.450778
iter 40 value 87.404552
iter 50 value 84.699186
iter 60 value 83.151142
iter 70 value 82.142139
iter 80 value 80.521839
iter 90 value 79.890013
iter 100 value 79.635173
final value 79.635173
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 114.317577
iter 10 value 93.539594
iter 20 value 91.258949
iter 30 value 87.132821
iter 40 value 84.501003
iter 50 value 82.072568
iter 60 value 81.550085
iter 70 value 81.280934
iter 80 value 80.740615
iter 90 value 80.512454
iter 100 value 80.404401
final value 80.404401
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.345395
iter 10 value 96.984432
iter 20 value 83.558172
iter 30 value 81.939222
iter 40 value 81.481147
iter 50 value 80.579188
iter 60 value 80.215400
iter 70 value 79.984530
iter 80 value 79.889766
iter 90 value 79.826868
iter 100 value 79.120120
final value 79.120120
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.267945
iter 10 value 94.354042
iter 20 value 93.833621
iter 30 value 87.945201
iter 40 value 84.785137
iter 50 value 84.012750
iter 60 value 83.796078
iter 70 value 83.158027
iter 80 value 82.112203
iter 90 value 80.151570
iter 100 value 78.913018
final value 78.913018
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.766811
iter 10 value 94.560716
iter 20 value 93.535903
iter 30 value 87.716472
iter 40 value 83.953709
iter 50 value 80.554298
iter 60 value 79.637870
iter 70 value 79.226529
iter 80 value 78.785727
iter 90 value 78.651505
iter 100 value 78.433978
final value 78.433978
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.677175
iter 10 value 94.714412
iter 20 value 85.429845
iter 30 value 84.327656
iter 40 value 83.681456
iter 50 value 83.180266
iter 60 value 82.957383
iter 70 value 82.196228
iter 80 value 80.992950
iter 90 value 80.791884
iter 100 value 80.032003
final value 80.032003
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.950078
iter 10 value 92.947643
iter 20 value 92.947284
final value 92.945830
converged
Fitting Repeat 2
# weights: 103
initial value 94.952710
final value 93.947883
converged
Fitting Repeat 3
# weights: 103
initial value 97.537256
iter 10 value 94.054633
final value 94.052923
converged
Fitting Repeat 4
# weights: 103
initial value 98.985921
final value 94.054555
converged
Fitting Repeat 5
# weights: 103
initial value 95.506738
final value 94.054655
converged
Fitting Repeat 1
# weights: 305
initial value 115.503667
iter 10 value 92.951084
iter 20 value 92.949187
iter 30 value 92.779586
iter 40 value 89.841116
iter 50 value 82.351741
iter 60 value 81.943620
iter 70 value 80.845356
iter 80 value 80.470900
iter 90 value 80.277055
final value 80.276882
converged
Fitting Repeat 2
# weights: 305
initial value 96.890361
iter 10 value 94.090534
iter 20 value 94.053978
iter 30 value 94.052930
final value 94.052913
converged
Fitting Repeat 3
# weights: 305
initial value 108.781430
iter 10 value 94.063262
iter 20 value 94.058266
iter 30 value 92.960653
iter 40 value 92.843424
iter 50 value 92.596394
iter 60 value 92.584896
iter 70 value 92.573109
iter 80 value 83.049187
iter 90 value 81.478541
iter 100 value 81.227003
final value 81.227003
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 115.621190
iter 10 value 94.057434
iter 20 value 94.052939
iter 30 value 94.008187
iter 40 value 92.930230
iter 50 value 82.212892
iter 60 value 82.056336
iter 70 value 81.648439
iter 80 value 81.397324
final value 81.392364
converged
Fitting Repeat 5
# weights: 305
initial value 100.538672
iter 10 value 92.950972
iter 20 value 92.948032
iter 30 value 92.946149
final value 92.946038
converged
Fitting Repeat 1
# weights: 507
initial value 105.582286
iter 10 value 93.975772
iter 20 value 93.955022
iter 30 value 93.954789
iter 40 value 92.216746
iter 50 value 87.472224
iter 60 value 87.394094
iter 70 value 84.344018
iter 80 value 84.221160
iter 90 value 82.293008
iter 100 value 80.305670
final value 80.305670
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 101.978487
iter 10 value 92.773673
iter 20 value 92.589734
iter 30 value 92.584481
iter 40 value 87.476439
iter 50 value 86.527446
iter 60 value 86.304661
iter 70 value 86.298462
final value 86.298460
converged
Fitting Repeat 3
# weights: 507
initial value 98.832899
iter 10 value 92.959463
iter 20 value 92.841438
iter 30 value 92.830109
iter 40 value 92.825340
iter 50 value 92.824271
iter 60 value 92.761274
iter 70 value 82.014244
iter 80 value 81.174666
final value 81.173740
converged
Fitting Repeat 4
# weights: 507
initial value 102.160374
iter 10 value 92.941830
iter 20 value 92.864704
final value 92.823093
converged
Fitting Repeat 5
# weights: 507
initial value 109.559433
iter 10 value 94.061547
iter 20 value 94.053628
iter 30 value 93.679589
iter 40 value 92.121104
iter 50 value 85.496624
iter 60 value 85.476820
iter 70 value 83.969397
iter 80 value 83.763724
iter 90 value 83.666798
iter 100 value 83.664440
final value 83.664440
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.608051
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 95.900129
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 101.035324
final value 93.288889
converged
Fitting Repeat 4
# weights: 103
initial value 99.790552
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 99.654579
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 99.385327
final value 93.836066
converged
Fitting Repeat 2
# weights: 305
initial value 105.313162
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 100.871532
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 104.885572
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 98.804215
final value 93.836066
converged
Fitting Repeat 1
# weights: 507
initial value 102.433179
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 99.162861
final value 93.836066
converged
Fitting Repeat 3
# weights: 507
initial value 117.954509
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 118.554617
iter 10 value 94.052910
iter 10 value 94.052910
iter 10 value 94.052910
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 102.599737
iter 10 value 88.933811
iter 20 value 84.458720
iter 30 value 83.505099
iter 40 value 83.334915
iter 50 value 83.334634
final value 83.334625
converged
Fitting Repeat 1
# weights: 103
initial value 108.866998
iter 10 value 94.019349
iter 20 value 93.729400
iter 30 value 89.969779
iter 40 value 89.415629
iter 50 value 87.016035
iter 60 value 86.093189
iter 70 value 85.769819
iter 80 value 83.482744
iter 90 value 82.918590
iter 100 value 82.856273
final value 82.856273
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 102.283845
iter 10 value 92.416857
iter 20 value 87.742824
iter 30 value 85.888570
iter 40 value 85.539601
iter 50 value 85.448984
iter 60 value 85.221402
iter 70 value 85.075164
iter 80 value 85.025748
final value 85.025735
converged
Fitting Repeat 3
# weights: 103
initial value 100.534334
iter 10 value 94.056057
iter 20 value 94.034053
iter 30 value 94.002179
iter 40 value 93.784719
iter 50 value 87.468225
iter 60 value 87.072173
iter 70 value 86.962835
iter 80 value 84.012236
iter 90 value 82.723450
iter 100 value 82.604890
final value 82.604890
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 103.534018
iter 10 value 94.057351
iter 20 value 93.549390
iter 30 value 88.404529
iter 40 value 87.203406
iter 50 value 85.891105
iter 60 value 85.415967
iter 70 value 85.246130
iter 80 value 85.201417
iter 90 value 85.051906
final value 85.025735
converged
Fitting Repeat 5
# weights: 103
initial value 98.917055
iter 10 value 91.812964
iter 20 value 87.477593
iter 30 value 86.717761
iter 40 value 85.158903
iter 50 value 85.009427
iter 60 value 85.008867
final value 85.008729
converged
Fitting Repeat 1
# weights: 305
initial value 112.477816
iter 10 value 93.910613
iter 20 value 89.099912
iter 30 value 87.693522
iter 40 value 85.716127
iter 50 value 84.335906
iter 60 value 83.906395
iter 70 value 83.602217
iter 80 value 83.024235
iter 90 value 82.501714
iter 100 value 81.827997
final value 81.827997
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.992827
iter 10 value 94.045945
iter 20 value 89.131500
iter 30 value 85.844973
iter 40 value 85.264263
iter 50 value 85.216810
iter 60 value 85.175519
iter 70 value 84.809782
iter 80 value 84.252807
iter 90 value 84.062581
iter 100 value 83.277894
final value 83.277894
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.351343
iter 10 value 94.220714
iter 20 value 92.729625
iter 30 value 88.208802
iter 40 value 85.846047
iter 50 value 85.613370
iter 60 value 83.909944
iter 70 value 82.650414
iter 80 value 82.255606
iter 90 value 82.162137
iter 100 value 82.055491
final value 82.055491
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.726345
iter 10 value 93.877453
iter 20 value 93.240068
iter 30 value 87.331067
iter 40 value 85.472355
iter 50 value 85.326398
iter 60 value 84.438911
iter 70 value 83.340659
iter 80 value 83.141935
iter 90 value 82.727502
iter 100 value 82.229872
final value 82.229872
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 117.223923
iter 10 value 94.025902
iter 20 value 93.751464
iter 30 value 90.359810
iter 40 value 87.612806
iter 50 value 86.510070
iter 60 value 84.673251
iter 70 value 84.196233
iter 80 value 83.548875
iter 90 value 82.210898
iter 100 value 81.413576
final value 81.413576
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 135.599174
iter 10 value 96.785451
iter 20 value 94.273222
iter 30 value 93.379679
iter 40 value 88.129990
iter 50 value 87.703632
iter 60 value 87.271093
iter 70 value 85.863508
iter 80 value 83.677023
iter 90 value 83.156918
iter 100 value 82.636463
final value 82.636463
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.262955
iter 10 value 92.645344
iter 20 value 87.714509
iter 30 value 85.948454
iter 40 value 84.257396
iter 50 value 82.727870
iter 60 value 82.139227
iter 70 value 81.903895
iter 80 value 81.740561
iter 90 value 81.624288
iter 100 value 81.578283
final value 81.578283
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.478082
iter 10 value 94.223173
iter 20 value 93.800637
iter 30 value 88.732531
iter 40 value 86.691085
iter 50 value 86.363879
iter 60 value 85.153859
iter 70 value 83.897413
iter 80 value 83.417890
iter 90 value 83.278603
iter 100 value 83.243832
final value 83.243832
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.217406
iter 10 value 93.971304
iter 20 value 93.647225
iter 30 value 89.312849
iter 40 value 85.943612
iter 50 value 85.427074
iter 60 value 83.718111
iter 70 value 82.809555
iter 80 value 82.354053
iter 90 value 82.165165
iter 100 value 82.003880
final value 82.003880
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.567703
iter 10 value 93.982449
iter 20 value 93.086036
iter 30 value 86.876679
iter 40 value 84.348822
iter 50 value 82.555520
iter 60 value 81.671710
iter 70 value 81.266818
iter 80 value 81.146557
iter 90 value 81.120424
iter 100 value 81.080994
final value 81.080994
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.766855
iter 10 value 94.054447
iter 20 value 94.052921
final value 94.052912
converged
Fitting Repeat 2
# weights: 103
initial value 99.811909
iter 10 value 94.054700
iter 20 value 94.039940
iter 30 value 93.605418
iter 40 value 93.604919
final value 93.604879
converged
Fitting Repeat 3
# weights: 103
initial value 95.734243
final value 94.054957
converged
Fitting Repeat 4
# weights: 103
initial value 97.845874
final value 94.054369
converged
Fitting Repeat 5
# weights: 103
initial value 95.856020
final value 94.054538
converged
Fitting Repeat 1
# weights: 305
initial value 95.732631
iter 10 value 93.294054
iter 20 value 93.292826
iter 30 value 88.293421
iter 40 value 86.424107
iter 50 value 86.409748
iter 60 value 86.399004
iter 70 value 86.398367
iter 80 value 86.397186
iter 80 value 86.397186
iter 80 value 86.397185
final value 86.397185
converged
Fitting Repeat 2
# weights: 305
initial value 97.280089
iter 10 value 93.811904
iter 20 value 93.807830
iter 30 value 93.606271
final value 93.605756
converged
Fitting Repeat 3
# weights: 305
initial value 98.464514
iter 10 value 93.809801
iter 20 value 93.805280
iter 30 value 86.818541
iter 40 value 86.176898
iter 50 value 85.990114
final value 85.990032
converged
Fitting Repeat 4
# weights: 305
initial value 103.375371
iter 10 value 93.352251
iter 20 value 93.109234
iter 30 value 93.095959
iter 40 value 91.672391
iter 50 value 91.659736
iter 60 value 91.659051
iter 70 value 91.643066
iter 80 value 87.452124
iter 90 value 84.186399
iter 100 value 83.590026
final value 83.590026
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.032423
iter 10 value 94.057531
iter 20 value 94.050088
iter 30 value 91.950046
iter 40 value 86.641708
iter 50 value 86.597109
iter 60 value 86.482298
iter 70 value 85.735649
iter 80 value 85.735322
final value 85.735307
converged
Fitting Repeat 1
# weights: 507
initial value 110.712456
iter 10 value 94.060501
iter 20 value 94.054145
iter 30 value 93.985852
iter 40 value 93.193583
iter 50 value 85.243856
iter 60 value 84.601621
final value 84.601533
converged
Fitting Repeat 2
# weights: 507
initial value 99.149551
iter 10 value 94.061096
iter 20 value 93.986038
final value 93.836688
converged
Fitting Repeat 3
# weights: 507
initial value 111.770880
iter 10 value 94.061066
iter 20 value 93.870367
iter 30 value 91.901538
iter 40 value 89.203903
iter 50 value 89.165315
iter 60 value 88.820238
iter 70 value 88.781328
iter 80 value 88.757111
iter 90 value 88.666969
iter 100 value 88.652871
final value 88.652871
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.642150
iter 10 value 93.844312
iter 20 value 93.836204
iter 30 value 87.170425
iter 40 value 86.009801
iter 50 value 85.868280
iter 60 value 85.865113
final value 85.865085
converged
Fitting Repeat 5
# weights: 507
initial value 95.754059
iter 10 value 94.059667
iter 20 value 92.587009
iter 30 value 88.944493
iter 40 value 88.943310
final value 88.942504
converged
Fitting Repeat 1
# weights: 103
initial value 102.309869
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 103.003139
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 115.137004
final value 94.354396
converged
Fitting Repeat 4
# weights: 103
initial value 96.266734
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.316292
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 108.964749
iter 10 value 93.928539
iter 20 value 93.701839
final value 93.701658
converged
Fitting Repeat 2
# weights: 305
initial value 95.273572
iter 10 value 93.942751
iter 20 value 93.942287
iter 20 value 93.942286
iter 20 value 93.942286
final value 93.942286
converged
Fitting Repeat 3
# weights: 305
initial value 108.683220
final value 94.354396
converged
Fitting Repeat 4
# weights: 305
initial value 96.144565
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 97.426087
iter 10 value 94.354396
iter 10 value 94.354396
iter 10 value 94.354396
final value 94.354396
converged
Fitting Repeat 1
# weights: 507
initial value 96.599670
final value 94.484208
converged
Fitting Repeat 2
# weights: 507
initial value 100.521203
iter 10 value 87.013000
iter 20 value 84.435619
iter 30 value 84.252095
iter 40 value 84.107129
final value 84.107012
converged
Fitting Repeat 3
# weights: 507
initial value 105.789449
iter 10 value 94.334955
iter 20 value 93.352385
iter 30 value 93.315871
final value 93.315658
converged
Fitting Repeat 4
# weights: 507
initial value 97.833606
iter 10 value 94.275432
final value 94.275362
converged
Fitting Repeat 5
# weights: 507
initial value 103.364587
final value 93.701658
converged
Fitting Repeat 1
# weights: 103
initial value 102.033403
iter 10 value 94.373644
iter 20 value 88.915173
iter 30 value 84.862054
iter 40 value 84.549170
iter 50 value 84.018772
iter 60 value 83.822379
iter 70 value 83.765549
final value 83.762623
converged
Fitting Repeat 2
# weights: 103
initial value 102.517752
iter 10 value 94.427260
iter 20 value 87.763217
iter 30 value 86.426390
iter 40 value 84.749459
iter 50 value 84.211278
iter 60 value 84.073021
iter 70 value 84.026976
final value 84.026859
converged
Fitting Repeat 3
# weights: 103
initial value 97.815412
iter 10 value 94.420721
iter 20 value 91.767786
iter 30 value 87.635060
iter 40 value 86.032867
iter 50 value 85.686930
iter 60 value 84.151904
iter 70 value 84.026936
final value 84.026859
converged
Fitting Repeat 4
# weights: 103
initial value 96.011333
iter 10 value 94.239102
iter 20 value 86.700556
iter 30 value 84.982863
iter 40 value 84.803941
iter 50 value 84.028169
iter 60 value 83.971560
final value 83.971403
converged
Fitting Repeat 5
# weights: 103
initial value 97.881887
iter 10 value 94.486700
iter 20 value 94.041127
iter 30 value 93.981068
iter 40 value 86.667603
iter 50 value 85.574870
iter 60 value 84.871602
iter 70 value 84.285222
iter 80 value 84.088450
iter 90 value 84.027122
final value 84.026859
converged
Fitting Repeat 1
# weights: 305
initial value 105.167430
iter 10 value 94.457812
iter 20 value 91.845621
iter 30 value 88.030944
iter 40 value 87.718312
iter 50 value 87.142319
iter 60 value 86.377090
iter 70 value 84.680092
iter 80 value 83.869348
iter 90 value 82.848651
iter 100 value 80.960534
final value 80.960534
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.534846
iter 10 value 94.596384
iter 20 value 92.446693
iter 30 value 86.023651
iter 40 value 84.773957
iter 50 value 84.649166
iter 60 value 84.445108
iter 70 value 82.875665
iter 80 value 80.966530
iter 90 value 80.776424
iter 100 value 80.647293
final value 80.647293
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.862483
iter 10 value 93.992318
iter 20 value 86.372094
iter 30 value 83.265858
iter 40 value 82.365270
iter 50 value 82.209180
iter 60 value 81.289155
iter 70 value 80.558814
iter 80 value 80.403176
iter 90 value 80.398111
iter 100 value 80.396013
final value 80.396013
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.129348
iter 10 value 94.132542
iter 20 value 90.119215
iter 30 value 84.461541
iter 40 value 82.041849
iter 50 value 81.895321
iter 60 value 81.584594
iter 70 value 81.168077
iter 80 value 80.979479
iter 90 value 80.948154
iter 100 value 80.916962
final value 80.916962
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.669892
iter 10 value 94.527397
iter 20 value 94.488739
iter 30 value 94.428046
iter 40 value 93.513415
iter 50 value 88.608693
iter 60 value 85.699480
iter 70 value 85.294852
iter 80 value 85.065336
iter 90 value 83.250585
iter 100 value 82.335584
final value 82.335584
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.462072
iter 10 value 95.179234
iter 20 value 92.950767
iter 30 value 89.730149
iter 40 value 87.981693
iter 50 value 87.162592
iter 60 value 83.884893
iter 70 value 81.643074
iter 80 value 80.799623
iter 90 value 80.717196
iter 100 value 80.677904
final value 80.677904
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.657772
iter 10 value 94.380617
iter 20 value 85.746484
iter 30 value 85.147202
iter 40 value 84.270654
iter 50 value 83.991913
iter 60 value 82.233688
iter 70 value 81.127302
iter 80 value 80.839878
iter 90 value 80.704480
iter 100 value 80.525677
final value 80.525677
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.608371
iter 10 value 96.056689
iter 20 value 94.584565
iter 30 value 89.560861
iter 40 value 86.998262
iter 50 value 85.401723
iter 60 value 82.888837
iter 70 value 82.501221
iter 80 value 82.205185
iter 90 value 81.058901
iter 100 value 80.684547
final value 80.684547
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.348701
iter 10 value 94.612805
iter 20 value 93.972112
iter 30 value 88.268812
iter 40 value 87.915293
iter 50 value 87.569817
iter 60 value 86.821155
iter 70 value 83.730497
iter 80 value 82.409556
iter 90 value 81.837713
iter 100 value 80.943590
final value 80.943590
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.927294
iter 10 value 94.201365
iter 20 value 85.424157
iter 30 value 84.357696
iter 40 value 83.817433
iter 50 value 83.685815
iter 60 value 82.092654
iter 70 value 81.499446
iter 80 value 81.064832
iter 90 value 80.941015
iter 100 value 80.905614
final value 80.905614
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.770592
final value 94.485752
converged
Fitting Repeat 2
# weights: 103
initial value 98.387056
final value 94.485753
converged
Fitting Repeat 3
# weights: 103
initial value 95.993619
iter 10 value 94.485665
iter 20 value 94.385862
iter 30 value 85.653259
iter 40 value 85.650183
iter 50 value 84.766330
iter 60 value 84.765452
iter 70 value 84.764131
iter 80 value 84.764028
final value 84.763988
converged
Fitting Repeat 4
# weights: 103
initial value 97.499859
final value 94.485786
converged
Fitting Repeat 5
# weights: 103
initial value 104.233661
final value 94.485844
converged
Fitting Repeat 1
# weights: 305
initial value 112.718890
iter 10 value 94.170475
iter 20 value 94.165837
iter 30 value 86.846704
iter 40 value 83.570820
iter 50 value 83.555736
iter 60 value 83.178534
iter 70 value 82.789091
iter 80 value 82.572025
iter 90 value 82.571926
final value 82.571914
converged
Fitting Repeat 2
# weights: 305
initial value 101.109664
iter 10 value 94.488838
iter 20 value 94.061242
iter 30 value 85.019317
iter 40 value 84.876527
iter 50 value 84.762423
final value 84.483804
converged
Fitting Repeat 3
# weights: 305
initial value 103.615422
iter 10 value 94.487127
final value 94.484228
converged
Fitting Repeat 4
# weights: 305
initial value 98.622834
iter 10 value 94.317116
iter 20 value 93.840498
iter 30 value 87.199302
iter 40 value 86.522652
final value 86.522463
converged
Fitting Repeat 5
# weights: 305
initial value 96.177336
iter 10 value 94.488390
iter 20 value 94.477174
iter 30 value 93.702373
final value 93.702372
converged
Fitting Repeat 1
# weights: 507
initial value 101.723586
iter 10 value 94.173085
iter 20 value 93.960269
iter 30 value 87.817220
iter 40 value 87.263060
iter 50 value 87.258919
iter 60 value 85.910567
final value 85.899643
converged
Fitting Repeat 2
# weights: 507
initial value 97.750267
iter 10 value 92.198021
iter 20 value 84.332560
iter 30 value 83.016912
iter 40 value 81.720491
iter 50 value 81.710960
iter 60 value 81.552774
iter 70 value 81.118836
iter 80 value 80.892456
iter 90 value 80.469554
iter 100 value 80.446991
final value 80.446991
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.092034
iter 10 value 94.362673
iter 20 value 93.966710
iter 30 value 93.933013
iter 40 value 93.932601
final value 93.932566
converged
Fitting Repeat 4
# weights: 507
initial value 108.642475
iter 10 value 93.608719
iter 20 value 93.601675
iter 30 value 85.644008
iter 40 value 84.418604
iter 50 value 84.400987
iter 60 value 84.380196
iter 70 value 84.379801
iter 80 value 84.377255
iter 90 value 84.376904
iter 100 value 84.376494
final value 84.376494
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 99.575451
iter 10 value 94.491825
iter 20 value 93.956220
iter 30 value 89.788913
iter 40 value 89.774012
iter 50 value 89.735190
iter 60 value 84.004561
iter 70 value 83.216507
iter 80 value 82.610930
iter 90 value 82.333976
iter 100 value 82.262891
final value 82.262891
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 132.677321
iter 10 value 117.875795
iter 20 value 114.676234
iter 30 value 107.718955
iter 40 value 106.692748
iter 50 value 105.985042
iter 60 value 105.402592
iter 70 value 105.160153
iter 80 value 104.929391
iter 90 value 104.894820
iter 100 value 104.676891
final value 104.676891
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 125.829967
iter 10 value 117.255513
iter 20 value 107.761298
iter 30 value 106.728854
iter 40 value 106.109281
iter 50 value 103.409841
iter 60 value 102.982953
iter 70 value 102.450476
iter 80 value 102.087771
final value 102.065847
converged
Fitting Repeat 3
# weights: 305
initial value 124.041053
iter 10 value 118.023193
iter 20 value 117.715963
iter 30 value 112.310562
iter 40 value 106.679761
iter 50 value 105.713337
iter 60 value 105.666590
iter 70 value 104.015303
iter 80 value 102.408974
iter 90 value 101.532952
iter 100 value 101.286806
final value 101.286806
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 123.902911
iter 10 value 117.746842
iter 20 value 112.954985
iter 30 value 110.306998
iter 40 value 109.751369
iter 50 value 109.645648
iter 60 value 107.978992
iter 70 value 104.876741
iter 80 value 102.921625
iter 90 value 102.154467
iter 100 value 102.095201
final value 102.095201
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 131.979456
iter 10 value 118.052676
iter 20 value 117.856275
iter 30 value 110.872009
iter 40 value 107.529867
iter 50 value 106.439816
iter 60 value 106.089912
iter 70 value 104.891490
iter 80 value 103.310151
iter 90 value 102.057725
iter 100 value 100.963289
final value 100.963289
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Thu May 9 08:30:50 2024
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
54.870 2.200 72.581
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 38.130 | 0.615 | 38.827 | |
| FreqInteractors | 0.283 | 0.016 | 0.300 | |
| calculateAAC | 0.043 | 0.004 | 0.047 | |
| calculateAutocor | 0.716 | 0.020 | 0.739 | |
| calculateCTDC | 0.095 | 0.000 | 0.095 | |
| calculateCTDD | 0.769 | 0.000 | 0.770 | |
| calculateCTDT | 0.278 | 0.000 | 0.278 | |
| calculateCTriad | 0.459 | 0.020 | 0.483 | |
| calculateDC | 0.133 | 0.000 | 0.132 | |
| calculateF | 0.468 | 0.012 | 0.481 | |
| calculateKSAAP | 0.135 | 0.012 | 0.148 | |
| calculateQD_Sm | 2.492 | 0.031 | 2.530 | |
| calculateTC | 2.502 | 0.012 | 2.520 | |
| calculateTC_Sm | 0.399 | 0.000 | 0.400 | |
| corr_plot | 38.266 | 0.412 | 38.758 | |
| enrichfindP | 0.524 | 0.028 | 29.054 | |
| enrichfind_hp | 0.085 | 0.000 | 1.456 | |
| enrichplot | 0.470 | 0.000 | 0.471 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.086 | 0.008 | 14.316 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.000 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.002 | |
| plotPPI | 0.083 | 0.000 | 0.084 | |
| pred_ensembel | 18.673 | 0.301 | 16.620 | |
| var_imp | 40.361 | 0.766 | 41.207 | |