| Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-11-02 11:40:35 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 480/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cyanoFilter 1.10.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: cyanoFilter |
| Version: 1.10.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings cyanoFilter_1.10.0.tar.gz |
| StartedAt: 2023-11-02 09:43:06 -0000 (Thu, 02 Nov 2023) |
| EndedAt: 2023-11-02 09:45:09 -0000 (Thu, 02 Nov 2023) |
| EllapsedTime: 122.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cyanoFilter.Rcheck |
| Warnings: 0 |
##############################################################################
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### Running command:
###
### /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings cyanoFilter_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/cyanoFilter.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
gateFunc 12.835 0.466 10.578
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
| name | user | system | elapsed | |
| MarginEvents | 1.156 | 0.037 | 1.265 | |
| PhytoFilter | 0.831 | 0.028 | 0.861 | |
| PhytopFilter | 1.077 | 0.048 | 1.128 | |
| accTest | 0.476 | 0.011 | 0.491 | |
| accuracy | 0.563 | 0.008 | 0.573 | |
| cellmargin | 0.410 | 0.004 | 0.416 | |
| clusterExtract | 1.102 | 0.020 | 1.126 | |
| clusterExtractp | 1.126 | 0.020 | 1.149 | |
| debrisNc | 0.439 | 0.016 | 0.456 | |
| fullFlowframe-MarginEvents-method | 0.420 | 0.024 | 0.446 | |
| fullFlowframe-PhytopFilter-method | 0.831 | 0.020 | 0.853 | |
| fullFlowframe | 0.402 | 0.004 | 0.406 | |
| gateFunc | 12.835 | 0.466 | 10.578 | |
| ggpairsDens | 4.101 | 0.176 | 4.299 | |
| ggplotDens | 0.689 | 0.035 | 0.725 | |
| ggplotDens2 | 1.156 | 0.012 | 1.172 | |
| goodfcs | 0.064 | 0.001 | 0.084 | |
| is.DebrisFilter | 0.001 | 0.000 | 0.001 | |
| is.MarginEvents | 0 | 0 | 0 | |
| is.PhytopFilter | 0 | 0 | 0 | |
| is.flowFrame | 0.001 | 0.000 | 0.000 | |
| is.flowSet | 0.000 | 0.000 | 0.001 | |
| lnTrans | 0.288 | 0.011 | 0.301 | |
| newFlowframe | 0.298 | 0.028 | 0.330 | |
| nona | 0.140 | 0.004 | 0.144 | |
| noneg | 0.254 | 0.024 | 0.278 | |
| oneDgate | 0.299 | 0.016 | 0.315 | |
| pairsPlot | 2.256 | 0.056 | 2.317 | |
| pigmentGate | 0.380 | 0.016 | 0.396 | |
| reducedFlowframe-MarginEvents-method | 0.712 | 0.052 | 0.766 | |
| reducedFlowframe | 0.418 | 0.008 | 0.427 | |
| retain | 0.022 | 0.000 | 0.022 | |
| rowNumbers | 0.279 | 0.020 | 0.300 | |
| summaries-DebrisFilter-method | 0.399 | 0.004 | 0.403 | |
| summaries-MarginEvents-method | 0.409 | 0.004 | 0.413 | |
| summaries-PhytopFilter-method | 1.119 | 0.012 | 1.134 | |
| summaries | 0.420 | 0.012 | 0.433 | |