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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:Travel.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings Travel_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/Travel.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Travel/DESCRIPTION’ ... OK
* this is package ‘Travel’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Travel’ can be installed ... WARNING
Found the following significant warnings:
  Warning: Package 'Travel' is deprecated and will be removed from Bioconductor
See ‘/home/biocbuild/bbs-3.18-bioc/meat/Travel.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 10.3.1’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... NOTE
  installed size is  8.7Mb
  sub-directories of 1Mb or more:
    libs   8.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/Travel.Rcheck/00check.log’
for details.

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### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL Travel
###
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* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘Travel’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c Cpp_interface.cpp -o Cpp_interface.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c altfile_operations.cpp -o altfile_operations.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c altmmap_operations.cpp -o altmmap_operations.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c altrep_manager.cpp -o altrep_manager.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c class_Cache_block.cpp -o class_Cache_block.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c class_Filesystem_cache_copier.cpp -o class_Filesystem_cache_copier.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c class_Filesystem_file_data.cpp -o class_Filesystem_file_data.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c class_Memory_mapped.cpp -o class_Memory_mapped.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c class_Protect_guard.cpp -o class_Protect_guard.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c class_Subset_index.cpp -o class_Subset_index.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c class_Timer.cpp -o class_Timer.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c class_Unique_buffer.cpp -o class_Unique_buffer.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c examples.cpp -o examples.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c filesystem_manager.cpp -o filesystem_manager.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c filesystem_operations_dokan.cpp -o filesystem_operations_dokan.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c filesystem_operations_fuse.cpp -o filesystem_operations_fuse.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c memory_mapped_file.cpp -o memory_mapped_file.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c profile.cpp -o profile.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c read_write_operations.cpp -o read_write_operations.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c unit_test_utils.cpp -o unit_test_utils.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c unit_tests.cpp -o unit_tests.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c utils.cpp -o utils.o
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o Travel.so Cpp_interface.o RcppExports.o altfile_operations.o altmmap_operations.o altrep_manager.o class_Cache_block.o class_Filesystem_cache_copier.o class_Filesystem_file_data.o class_Memory_mapped.o class_Protect_guard.o class_Subset_index.o class_Timer.o class_Unique_buffer.o examples.o filesystem_manager.o filesystem_operations_dokan.o filesystem_operations_fuse.o memory_mapped_file.o profile.o read_write_operations.o unit_test_utils.o unit_tests.o utils.o -lfuse -pthread -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-Travel/00new/Travel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'Travel' is deprecated and will be removed from Bioconductor
  version 3.19
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: Package 'Travel' is deprecated and will be removed from Bioconductor
  version 3.19
** testing if installed package keeps a record of temporary installation path
* DONE (Travel)

R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Travel)
Warning message:
Package 'Travel' is deprecated and will be removed from Bioconductor
  version 3.19 
> 
> test_check("Travel")
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 131 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test_H_mount_test.R:24:1'

[ FAIL 0 | WARN 0 | SKIP 1 | PASS 131 ]
> 
> proc.time()
   user  system elapsed 
  7.291   0.329  10.609