| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-04-17 11:36:28 -0400 (Wed, 17 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2169/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Jiefei Wang
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the Travel package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Travel.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Travel |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Travel |
| StartedAt: 2024-04-15 19:38:37 -0400 (Mon, 15 Apr 2024) |
| EndedAt: 2024-04-15 19:39:06 -0400 (Mon, 15 Apr 2024) |
| EllapsedTime: 29.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Travel
###
##############################################################################
##############################################################################
* checking for file ‘Travel/DESCRIPTION’ ... OK
* preparing ‘Travel’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘Travel’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c Cpp_interface.cpp -o Cpp_interface.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c altfile_operations.cpp -o altfile_operations.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c altmmap_operations.cpp -o altmmap_operations.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c altrep_manager.cpp -o altrep_manager.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c class_Cache_block.cpp -o class_Cache_block.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c class_Filesystem_cache_copier.cpp -o class_Filesystem_cache_copier.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG `pkg-config fuse --cflags` -I'/home/biocbuild/bbs-3.18-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c class_Filesystem_file_data.cpp -o class_Filesystem_file_data.o
In file included from class_Filesystem_file_data.h:5,
from class_Filesystem_file_data.cpp:1:
class_Cache_block.h:10:5: error: ‘size_t’ does not name a type
10 | size_t size;
| ^~~~~~
class_Cache_block.h:1:1: note: ‘size_t’ is defined in header ‘<cstddef>’; did you forget to ‘#include <cstddef>’?
+++ |+#include <cstddef>
1 | #ifndef HEADER_CACHE_BLOCK
class_Cache_block.h:11:5: error: ‘size_t’ does not name a type
11 | size_t *counter = nullptr;
| ^~~~~~
class_Cache_block.h:11:5: note: ‘size_t’ is defined in header ‘<cstddef>’; did you forget to ‘#include <cstddef>’?
class_Cache_block.h:14:23: error: expected ‘)’ before ‘size’
14 | Cache_block(size_t size);
| ~ ^~~~~
| )
class_Cache_block.h:21:5: error: ‘size_t’ does not name a type
21 | size_t use_count() const;
| ^~~~~~
class_Cache_block.h:21:5: note: ‘size_t’ is defined in header ‘<cstddef>’; did you forget to ‘#include <cstddef>’?
class_Cache_block.h:23:5: error: ‘size_t’ does not name a type
23 | size_t get_size() const;
| ^~~~~~
class_Cache_block.h:23:5: note: ‘size_t’ is defined in header ‘<cstddef>’; did you forget to ‘#include <cstddef>’?
class_Cache_block.h:27:5: error: ‘size_t’ does not name a type
27 | size_t get_serialize_size() const;
| ^~~~~~
class_Cache_block.h:27:5: note: ‘size_t’ is defined in header ‘<cstddef>’; did you forget to ‘#include <cstddef>’?
class_Filesystem_file_data.cpp: In member function ‘size_t Filesystem_file_data::get_serialize_size()’:
class_Filesystem_file_data.cpp:70:26: error: ‘const class Cache_block’ has no member named ‘get_serialize_size’
70 | size += i.second.get_serialize_size();
| ^~~~~~~~~~~~~~~~~~
class_Filesystem_file_data.cpp: In member function ‘void Filesystem_file_data::serialize(void*)’:
class_Filesystem_file_data.cpp:92:39: error: ‘const class Cache_block’ has no member named ‘get_serialize_size’
92 | size_t buffer_size = i.second.get_serialize_size();
| ^~~~~~~~~~~~~~~~~~
class_Filesystem_file_data.cpp: In member function ‘void Filesystem_cache_index_iterator::compute_block_info()’:
class_Filesystem_file_data.cpp:177:39: error: ‘class Cache_block’ has no member named ‘get_size’
177 | block_length = block_iter->second.get_size() / type_size;
| ^~~~~~~~
make: *** [/home/biocbuild/bbs-3.18-bioc/R/etc/Makeconf:198: class_Filesystem_file_data.o] Error 1
ERROR: compilation failed for package ‘Travel’
* removing ‘/tmp/RtmpFK4yek/Rinst1e293c1c51faf6/Travel’
-----------------------------------
ERROR: package installation failed