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This page was generated on 2023-04-12 11:05:37 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for inveRsion on palomino4


To the developers/maintainers of the inveRsion package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/inveRsion.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 988/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
inveRsion 1.46.2  (landing page)
Alejandro Caceres
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/inveRsion
git_branch: RELEASE_3_16
git_last_commit: 0a0cb5e
git_last_commit_date: 2023-01-19 11:17:24 -0400 (Thu, 19 Jan 2023)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.5.1 Monterey / x86_64  OK    ERROR  skippedskipped

Summary

Package: inveRsion
Version: 1.46.2
Command: chmod a+r inveRsion -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data inveRsion
StartedAt: 2023-04-10 19:23:41 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 19:24:06 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 25.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r inveRsion -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data inveRsion
###
##############################################################################
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* checking for file 'inveRsion/DESCRIPTION' ... OK
* preparing 'inveRsion':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'inveRsion.Rnw' using Sweave
Loading required package: haplo.stats
Loading required package: arsenal


Hola!

welcome to inevRsion package. 
 
 

type: manual() for full manual 
      vignette("inveRsion") for a quick start 

Warning: Package 'inveRsion' is deprecated and will be removed from Bioconductor
  version 3.17
-Code haplotypes-
  reading data from haplotype file:
  F:/biocbuild/bbs-3.16-bioc/tmpdir/RtmpY5wV1M/Rinst2d70497a16fc/inveRsion/extdata/haplotypesROI.txt 

  preparing data
  Number of brakepoints: 248

Error: processing vignette 'inveRsion.Rnw' failed with diagnostics:
 chunk 3 
Error in lociPos[lociSel]/10^6 : non-numeric argument to binary operator

--- failed re-building 'inveRsion.Rnw'

SUMMARY: processing the following file failed:
  'inveRsion.Rnw'

Error: Vignette re-building failed.
Execution halted