Simone Tiberi
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/distinct |
| git_branch: RELEASE_3_16 |
| git_last_commit: b6b514e |
| git_last_commit_date: 2023-01-19 11:16:14 -0400 (Thu, 19 Jan 2023) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:31 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the distinct package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/distinct.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 547/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| distinct 1.10.2 (landing page) Simone Tiberi
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: distinct |
| Version: 1.10.2 |
| Command: rm -rf distinct.buildbin-libdir && mkdir distinct.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=distinct.buildbin-libdir distinct_1.10.2.tar.gz |
| StartedAt: 2023-04-11 07:54:26 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 07:56:00 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 93.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: distinct_1.10.2.zip |
| PackageFileSize: 1.959 MiB |
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### Running command:
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### rm -rf distinct.buildbin-libdir && mkdir distinct.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=distinct.buildbin-libdir distinct_1.10.2.tar.gz
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* installing *source* package 'distinct' ...
** using staged installation
** libs
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm.cpp -o Perm.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm_covariates.cpp -o Perm_covariates.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast.h:5,
from Perm_covariates.cpp:2:
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
553 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:569: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
569 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:573: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
573 | #pragma omp critical
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:633: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
633 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:650: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
650 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:668: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
668 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:683: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
683 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:698: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
698 | #pragma omp parallel for
|
Perm_covariates.cpp: In function 'arma::vec my_rint_reg(const mat&, const vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)':
Perm_covariates.cpp:189:16: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
189 | for(int i=0;i<p;i++)
| ~^~
Perm_covariates.cpp:210:12: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
210 | while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
| ~~~^~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm_covariates_parallel.cpp -o Perm_covariates_parallel.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast.h:5,
from Perm_covariates_parallel.cpp:2:
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
553 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:569: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
569 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:573: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas]
573 | #pragma omp critical
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:633: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
633 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:650: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
650 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:668: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
668 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:683: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
683 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:698: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
698 | #pragma omp parallel for
|
Perm_covariates_parallel.cpp: In function 'arma::vec my_rint_reg_parallel(const mat&, const vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)':
Perm_covariates_parallel.cpp:189:16: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
189 | for(int i=0;i<p;i++)
| ~^~
Perm_covariates_parallel.cpp:210:12: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
210 | while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
| ~~~^~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm_parallel.cpp -o Perm_parallel.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rfast/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -shared -s -static-libgcc -o distinct.dll tmp.def Perm.o Perm_covariates.o Perm_covariates_parallel.o Perm_parallel.o RcppExports.o -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/distinct.buildbin-libdir/00LOCK-distinct/00new/distinct/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'distinct' as distinct_1.10.2.zip
* DONE (distinct)