Simone Tiberi
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/distinct |
| git_branch: RELEASE_3_16 |
| git_last_commit: b6b514e |
| git_last_commit_date: 2023-01-19 11:16:14 -0400 (Thu, 19 Jan 2023) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:03 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the distinct package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/distinct.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 547/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| distinct 1.10.2 (landing page) Simone Tiberi
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: distinct |
| Version: 1.10.2 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL distinct |
| StartedAt: 2023-04-10 15:31:50 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 15:33:35 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 104.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL distinct
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* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘distinct’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include' -I/usr/local/include -fpic -g -O2 -Wall -c Perm.cpp -o Perm.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include' -I/usr/local/include -fpic -g -O2 -Wall -c Perm_covariates.cpp -o Perm_covariates.o
In file included from /home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast.h:5,
from Perm_covariates.cpp:2:
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
553 | #pragma omp parallel for
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/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:569: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
569 | #pragma omp parallel for
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/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:573: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
573 | #pragma omp critical
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/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:633: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
633 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:650: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
650 | #pragma omp parallel for
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/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:668: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
668 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:683: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
683 | #pragma omp parallel for
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/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:698: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
698 | #pragma omp parallel for
|
Perm_covariates.cpp: In function ‘arma::vec my_rint_reg(const mat&, const vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)’:
Perm_covariates.cpp:189:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
189 | for(int i=0;i<p;i++)
| ~^~
Perm_covariates.cpp:210:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
210 | while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
| ~~~^~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include' -I/usr/local/include -fpic -g -O2 -Wall -c Perm_covariates_parallel.cpp -o Perm_covariates_parallel.o
In file included from /home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast.h:5,
from Perm_covariates_parallel.cpp:2:
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
553 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:569: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
569 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:573: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
573 | #pragma omp critical
|
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:633: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
633 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:650: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
650 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:668: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
668 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:683: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
683 | #pragma omp parallel for
|
/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include/Rfast/matrix.hpp:698: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
698 | #pragma omp parallel for
|
Perm_covariates_parallel.cpp: In function ‘arma::vec my_rint_reg_parallel(const mat&, const vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)’:
Perm_covariates_parallel.cpp:189:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
189 | for(int i=0;i<p;i++)
| ~^~
Perm_covariates_parallel.cpp:210:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
210 | while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
| ~~~^~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include' -I/usr/local/include -fpic -g -O2 -Wall -c Perm_parallel.cpp -o Perm_parallel.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rfast/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o distinct.so Perm.o Perm_covariates.o Perm_covariates_parallel.o Perm_parallel.o RcppExports.o -L/home/biocbuild/bbs-3.16-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.16-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.16-bioc/R/site-library/00LOCK-distinct/00new/distinct/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (distinct)