| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:20 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SPLINTER package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPLINTER.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1949/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SPLINTER 1.24.0 (landing page) Diana Low
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: SPLINTER |
| Version: 1.24.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings SPLINTER_1.24.0.tar.gz |
| StartedAt: 2023-04-11 00:16:56 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 00:23:08 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 372.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SPLINTER.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings SPLINTER_1.24.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/SPLINTER.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘SPLINTER/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SPLINTER’ version ‘1.24.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SPLINTER’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
eventPlot 11.795 0.432 12.23
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘vignette.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SPLINTER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL SPLINTER ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘SPLINTER’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SPLINTER)
SPLINTER.Rcheck/SPLINTER-Ex.timings
| name | user | system | elapsed | |
| acceptor.m | 0.003 | 0.000 | 0.002 | |
| addEnsemblAnnotation | 0.006 | 0.000 | 0.006 | |
| callPrimer3 | 0.000 | 0.000 | 0.001 | |
| checkPrimer | 0.077 | 0.000 | 0.077 | |
| compatible_cds | 0.001 | 0.000 | 0.001 | |
| compatible_tx | 0.000 | 0.000 | 0.001 | |
| donor.m | 0.000 | 0.000 | 0.001 | |
| eventOutcomeCompare | 1.206 | 0.156 | 1.363 | |
| eventOutcomeTranslate | 0.349 | 0.052 | 0.401 | |
| eventPlot | 11.795 | 0.432 | 12.230 | |
| extendROI | 0.597 | 0.036 | 0.632 | |
| extractSpliceEvents | 0.003 | 0.000 | 0.003 | |
| extractSpliceSites | 0.084 | 0.004 | 0.088 | |
| findCompatibleEvents | 0.328 | 0.000 | 0.327 | |
| findCompatibleExon | 0.202 | 0.000 | 0.202 | |
| findTX | 0.013 | 0.000 | 0.013 | |
| getPCRsizes | 3.552 | 0.124 | 3.676 | |
| getRegionDNA | 0.292 | 0.000 | 0.292 | |
| insertRegion | 0.169 | 0.000 | 0.169 | |
| makeROI | 0.242 | 0.000 | 0.241 | |
| makeUniqueIDs | 0.004 | 0.000 | 0.003 | |
| pcr_result1 | 0.001 | 0.000 | 0.001 | |
| plot_seqlogo | 0.040 | 0.000 | 0.041 | |
| primers | 0.001 | 0.000 | 0.001 | |
| psiPlot | 0.248 | 0.000 | 0.248 | |
| region_minus_exon | 0.000 | 0.000 | 0.001 | |
| roi | 0 | 0 | 0 | |
| shapiroAcceptor | 0.420 | 0.008 | 0.427 | |
| shapiroDonor | 0.453 | 0.000 | 0.453 | |
| splice_data | 0.001 | 0.000 | 0.001 | |
| splice_fasta | 0.000 | 0.000 | 0.001 | |
| splitPCRhit | 0.002 | 0.000 | 0.002 | |
| thecds | 0.001 | 0.000 | 0.001 | |
| theexons | 0.001 | 0.000 | 0.001 | |
| valid_cds | 0.001 | 0.000 | 0.001 | |
| valid_tx | 0.001 | 0.000 | 0.001 | |