| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:19 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SELEX package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SELEX.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1834/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SELEX 1.30.0 (landing page) Harmen J. Bussemaker
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: SELEX |
| Version: 1.30.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:SELEX.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings SELEX_1.30.0.tar.gz |
| StartedAt: 2023-04-10 23:55:36 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 23:57:24 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 108.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SELEX.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:SELEX.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings SELEX_1.30.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/SELEX.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘SELEX/DESCRIPTION’ ... OK
* this is package ‘SELEX’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SELEX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
SELEX 21.901 1.717 6.625
selex.seqfilter 8.717 0.217 2.221
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘SELEX.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL SELEX ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘SELEX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SELEX)
SELEX.Rcheck/SELEX-Ex.timings
| name | user | system | elapsed | |
| SELEX | 21.901 | 1.717 | 6.625 | |
| selex.affinities | 1.122 | 0.210 | 0.482 | |
| selex.config | 0.118 | 0.011 | 0.030 | |
| selex.countSummary | 0.757 | 0.050 | 0.280 | |
| selex.counts | 0.910 | 0.034 | 0.414 | |
| selex.defineSample | 0.061 | 0.005 | 0.031 | |
| selex.exampledata | 0.065 | 0.000 | 0.022 | |
| selex.fastqPSFM | 0.637 | 0.009 | 0.267 | |
| selex.getAttributes | 0.392 | 0.000 | 0.065 | |
| selex.getRound0 | 0.230 | 0.002 | 0.091 | |
| selex.getSeqfilter | 0.075 | 0.000 | 0.022 | |
| selex.infogain | 1.469 | 0.028 | 0.352 | |
| selex.infogainSummary | 0.665 | 0.005 | 0.178 | |
| selex.jvmStatus | 0.104 | 0.004 | 0.027 | |
| selex.kmax | 1.252 | 0.072 | 0.500 | |
| selex.kmerPSFM | 0.592 | 0.020 | 0.147 | |
| selex.loadAnnotation | 0.306 | 0.000 | 0.111 | |
| selex.mm | 0.402 | 0.024 | 0.190 | |
| selex.mmProb | 0.416 | 0.008 | 0.172 | |
| selex.mmSummary | 0.450 | 0.014 | 0.188 | |
| selex.revcomp | 0.725 | 0.040 | 0.317 | |
| selex.run | 0.829 | 0.015 | 0.363 | |
| selex.sample | 0.130 | 0.008 | 0.055 | |
| selex.samplePSFM | 0.373 | 0.004 | 0.154 | |
| selex.sampleSummary | 0.150 | 0.004 | 0.060 | |
| selex.saveAnnotation | 0.026 | 0.004 | 0.030 | |
| selex.seqfilter | 8.717 | 0.217 | 2.221 | |
| selex.setwd | 0.050 | 0.000 | 0.016 | |
| selex.split | 0.398 | 0.011 | 0.132 | |
| selex.summary | 0.657 | 0.021 | 0.410 | |