| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:45 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the PharmacoGx package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PharmacoGx.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1469/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PharmacoGx 3.2.0 (landing page) Benjamin Haibe-Kains
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: PharmacoGx |
| Version: 3.2.0 |
| Command: rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=PharmacoGx.buildbin-libdir PharmacoGx_3.2.0.tar.gz |
| StartedAt: 2023-04-11 08:29:45 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 08:31:17 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 91.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: PharmacoGx_3.2.0.zip |
| PackageFileSize: 3.738 MiB |
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### Running command:
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### rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=PharmacoGx.buildbin-libdir PharmacoGx_3.2.0.tar.gz
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* installing *source* package 'PharmacoGx' ...
** using staged installation
** libs
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metaPermC.c -o metaPermC.o
metaPermC.c: In function 'runPerm':
metaPermC.c:143:12: warning: unused variable 'num_larger' [-Wunused-variable]
143 | uint64_t num_larger = 0;
| ^~~~~~~~~~
metaPermC.c: In function 'partialCorQUICKSTOP':
metaPermC.c:328:10: warning: unused variable 'temp' [-Wunused-variable]
328 | double temp;
| ^~~~
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rCPP_bridge.cpp -o rCPP_bridge.o
g++ -std=gnu++14 -shared -s -static-libgcc -o PharmacoGx.dll tmp.def RcppExports.o metaPermC.o rCPP_bridge.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/PharmacoGx.buildbin-libdir/00LOCK-PharmacoGx/00new/PharmacoGx/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'PharmacoGx' as PharmacoGx_3.2.0.zip
* DONE (PharmacoGx)