| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:41 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ModCon package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ModCon.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1241/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ModCon 1.6.0 (landing page) Johannes Ptok
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: ModCon |
| Version: 1.6.0 |
| Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ModCon.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings ModCon_1.6.0.tar.gz |
| StartedAt: 2023-04-11 03:32:31 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 03:37:04 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 273.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ModCon.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ModCon.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings ModCon_1.6.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/ModCon.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'ModCon/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ModCon' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ModCon' can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.5Mb
sub-directories of 1Mb or more:
R 1.2Mb
data 1.1Mb
extdata 4.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
slidingWindowHZEImanipulation 23.22 0.47 23.70
ModCon 17.63 0.95 30.65
changeSequenceHZEI 6.77 0.08 7.86
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'F:/biocbuild/bbs-3.16-bioc/meat/ModCon.Rcheck/00check.log'
for details.
ModCon.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL ModCon ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'ModCon' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ModCon)
ModCon.Rcheck/tests/testthat.Rout
R version 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(ModCon)
Loading required package: data.table
Loading required package: parallel
>
> test_check("ModCon")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 27 ]
>
> proc.time()
user system elapsed
103.09 2.92 160.14
ModCon.Rcheck/ModCon-Ex.timings
| name | user | system | elapsed | |
| Codons | 0 | 0 | 0 | |
| ModCon | 17.63 | 0.95 | 30.65 | |
| calculateHZEIint | 0 | 0 | 0 | |
| calculateMaxEntScanScore | 0.00 | 0.02 | 0.80 | |
| cds | 0 | 0 | 0 | |
| changeSequenceHZEI | 6.77 | 0.08 | 7.86 | |
| createCodonMatrix | 0 | 0 | 0 | |
| createFilialSequencePopulation | 0 | 0 | 0 | |
| decreaseGTsiteStrength | 0.47 | 0.03 | 0.50 | |
| degradeSAs | 2.39 | 0.12 | 2.96 | |
| degradeSDs | 1.65 | 0.02 | 1.68 | |
| generateRandomCodonsPerAA | 0 | 0 | 0 | |
| getOverlappingVectorsFromVector | 0 | 0 | 0 | |
| hbg | 0.75 | 0.41 | 1.15 | |
| hex | 0.10 | 0.10 | 0.21 | |
| increaseGTsiteStrength | 0.43 | 0.02 | 0.45 | |
| mutatePopulation | 0 | 0 | 0 | |
| recombineTwoSequences | 0 | 0 | 0 | |
| selectBestAndMean | 0.01 | 0.00 | 0.43 | |
| selectMatingIndividuals | 0.00 | 0.00 | 0.42 | |
| slidingWindowHZEImanipulation | 23.22 | 0.47 | 23.70 | |
| startModConApp | 0 | 0 | 0 | |