| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:08 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the IntEREst package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IntEREst.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 985/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IntEREst 1.22.2 (landing page) Ali Oghabian
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: IntEREst |
| Version: 1.22.2 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:IntEREst.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings IntEREst_1.22.2.tar.gz |
| StartedAt: 2023-04-10 21:26:52 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 21:33:16 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 384.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IntEREst.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:IntEREst.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings IntEREst_1.22.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/IntEREst.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘IntEREst/DESCRIPTION’ ... OK
* this is package ‘IntEREst’ version ‘1.22.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IntEREst’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
DEXSeqIntEREst 19.684 0.5 20.184
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘IntEREst.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
IntEREst.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL IntEREst ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘IntEREst’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IntEREst)
IntEREst.Rcheck/IntEREst-Ex.timings
| name | user | system | elapsed | |
| DEXSeqIntEREst | 19.684 | 0.500 | 20.184 | |
| addAnnotation | 0.028 | 0.000 | 0.029 | |
| annotateU12 | 2.262 | 0.080 | 2.342 | |
| applyOverlap | 0.143 | 0.000 | 0.143 | |
| attributes | 0.029 | 0.000 | 0.029 | |
| boxplot-method | 0.043 | 0.000 | 0.043 | |
| buildSsTypePwms | 0 | 0 | 0 | |
| counts-method | 0.027 | 0.000 | 0.027 | |
| deseqInterest | 4.817 | 0.180 | 4.997 | |
| exactTestInterest | 0.083 | 0.000 | 0.083 | |
| getRepeatTable | 0 | 0 | 0 | |
| glmInterest | 0.088 | 0.012 | 0.100 | |
| interest | 1.805 | 0.008 | 1.814 | |
| interest.sequential | 1.686 | 0.020 | 1.706 | |
| interestResult | 0.015 | 0.000 | 0.015 | |
| interestResultIntEx | 0.157 | 0.000 | 0.157 | |
| intexIndex | 0.002 | 0.000 | 0.002 | |
| lfc | 0.170 | 0.004 | 0.174 | |
| mergeInterestResult | 0.051 | 0.000 | 0.051 | |
| plot-method | 0.241 | 0.000 | 0.242 | |
| psi | 0.630 | 0.008 | 0.638 | |
| qlfInterest | 0.121 | 0.000 | 0.121 | |
| readInterestResults | 0.026 | 0.000 | 0.025 | |
| referencePrepare | 0.955 | 0.012 | 0.966 | |
| subInterestResult | 0.024 | 0.003 | 0.027 | |
| treatInterest | 0.095 | 0.007 | 0.102 | |
| u12Boxplot | 0.076 | 0.005 | 0.081 | |
| u12BoxplotNb | 0.056 | 0.000 | 0.056 | |
| u12DensityPlot | 0.181 | 0.000 | 0.182 | |
| u12Index | 0.004 | 0.000 | 0.004 | |
| u12NbIndex | 0.036 | 0.000 | 0.036 | |
| unionRefTr | 0.011 | 0.000 | 0.012 | |
| updateRowDataCol | 0.042 | 0.000 | 0.042 | |