| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:26 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the BiocParallel package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocParallel.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 169/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocParallel 1.32.6 (landing page) Martin Morgan
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: BiocParallel |
| Version: 1.32.6 |
| Command: rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocParallel.buildbin-libdir BiocParallel_1.32.6.tar.gz |
| StartedAt: 2023-04-11 07:37:32 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 07:38:31 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 59.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: BiocParallel_1.32.6.zip |
| PackageFileSize: 1.811 MiB |
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### Running command:
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### rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocParallel.buildbin-libdir BiocParallel_1.32.6.tar.gz
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* installing *source* package 'BiocParallel' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cpp11.cpp -o cpp11.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cpp11/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ipcmutex.cpp -o ipcmutex.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/apply.hpp:24,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/fold_impl.hpp:19,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/fold.hpp:20,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/remove_if.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/remove.hpp:18,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/function_types/components.hpp:44,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/function_types/is_member_function_pointer.hpp:14,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:10,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/tti/has_member_function.hpp:15,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:20,
from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:3:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
194 | failed ************ (Pred::************
| ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def cpp11.o ipcmutex.o -lbcrypt -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/BiocParallel.buildbin-libdir/00LOCK-BiocParallel/00new/BiocParallel/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BiocParallel' as BiocParallel_1.32.6.zip
* DONE (BiocParallel)