| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:36:10 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the PrecisionTrialDrawer package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1379/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PrecisionTrialDrawer 1.6.0 (landing page) Giorgio Melloni
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: PrecisionTrialDrawer |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrecisionTrialDrawer_1.6.0.tar.gz |
| StartedAt: 2021-05-06 04:52:33 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 04:57:02 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 268.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PrecisionTrialDrawer.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrecisionTrialDrawer_1.6.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/PrecisionTrialDrawer.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PrecisionTrialDrawer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PrecisionTrialDrawer’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PrecisionTrialDrawer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
newCancerPanel 7.157 0.128 21.154
panelDesigner 6.385 0.079 17.378
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PrecisionTrialDrawer.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PrecisionTrialDrawer ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘PrecisionTrialDrawer’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package can be loaded from final location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package keeps a record of temporary installation path * DONE (PrecisionTrialDrawer)
PrecisionTrialDrawer.Rcheck/PrecisionTrialDrawer-Ex.timings
| name | user | system | elapsed | |
| CancerPanel-class | 0.001 | 0.001 | 0.001 | |
| PrecisionTrialDrawer-package | 0.521 | 0.006 | 0.528 | |
| appendRepo | 0.344 | 0.019 | 0.366 | |
| coocMutexPlot | 1.748 | 0.047 | 1.796 | |
| coveragePlot | 0.197 | 0.013 | 0.212 | |
| coverageStackPlot | 0.236 | 0.023 | 0.260 | |
| cpArguments | 0.026 | 0.006 | 0.033 | |
| cpData | 0.029 | 0.004 | 0.034 | |
| cpDataSubset | 0.012 | 0.002 | 0.015 | |
| cpDesign | 0.030 | 0.005 | 0.034 | |
| cpFreq | 0.300 | 0.040 | 0.341 | |
| cpObj | 0.257 | 0.011 | 0.268 | |
| cpObj2 | 0.070 | 0.006 | 0.075 | |
| dataExtractor | 0.397 | 0.008 | 0.405 | |
| filterFusions | 0.362 | 0.016 | 0.378 | |
| filterMutations | 1.097 | 0.021 | 1.120 | |
| getAlterations | 0.192 | 0.006 | 0.426 | |
| newCancerPanel | 7.157 | 0.128 | 21.154 | |
| panelDesigner | 6.385 | 0.079 | 17.378 | |
| panelOptimizer | 0.002 | 0.000 | 0.002 | |
| panelexample | 0.009 | 0.003 | 0.012 | |
| propPowerSampleSize | 1.197 | 0.017 | 1.215 | |
| saturationPlot | 1.577 | 0.058 | 1.639 | |
| showCancerStudy | 0.014 | 0.001 | 0.037 | |
| showTumorType | 0.053 | 0.001 | 0.074 | |
| subsetAlterations | 0.569 | 0.023 | 0.593 | |
| survPowerSampleSize | 0.670 | 0.005 | 0.677 | |
| survPowerSampleSize1Arm | 0.752 | 0.005 | 0.759 | |