Nolwenn Le Meur
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/PCpheno |
| Branch: RELEASE_3_12 |
| Last Commit: 3715f48 |
| Last Changed Date: 2020-10-27 10:32:41 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:43 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the PCpheno package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1318/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PCpheno 1.52.0 (landing page) Nolwenn Le Meur
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: PCpheno |
| Version: 1.52.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/PCpheno_1.52.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.52.0.zip && rm PCpheno_1.52.0.tar.gz PCpheno_1.52.0.zip |
| StartedAt: 2021-05-05 19:08:14 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 19:09:01 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 46.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/PCpheno_1.52.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.52.0.zip && rm PCpheno_1.52.0.tar.gz PCpheno_1.52.0.zip
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install for i386
* installing *source* package 'PCpheno' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** help
*** installing help indices
converting help for package 'PCpheno'
finding HTML links ... done
CoHyperGParams-class html
CoHyperGResult-class html
Dudley html
Giaever html
HI html
KEGG2SCISI html
Kastenmayer html
Lesage html
Osterberg html
PCpheno.package html
SGDphenoL html
YEASTOHNOLOG html
buildFDMat html
categoryToEntrezBuilder html
complexStatus html
deResult-class html
densityEstimate html
getDescr html
getFDgene html
graphTheory html
gtResult-class html
overlap html
plot html
ppiInteraction html
reduceM html
testResult-class html
truncName html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** testing if installed package can be loaded from final location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PCpheno' ...
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
* MD5 sums
packaged installation of 'PCpheno' as PCpheno_1.52.0.zip
* DONE (PCpheno)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'PCpheno' successfully unpacked and MD5 sums checked