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This page was generated on 2025-12-11 12:05 -0500 (Thu, 11 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4879
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4670
kjohnson1macOS 13.7.5 Venturaarm644.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" 4604
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4669
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2303/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
variancePartition 1.40.0  (landing page)
Gabriel E. Hoffman
Snapshot Date: 2025-12-08 13:45 -0500 (Mon, 08 Dec 2025)
git_url: https://git.bioconductor.org/packages/variancePartition
git_branch: RELEASE_3_22
git_last_commit: 1ff4f97
git_last_commit_date: 2025-10-29 10:27:03 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
merida1macOS 12.7.6 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.7.5 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    NA  

BUILD results for variancePartition on merida1

To the developers/maintainers of the variancePartition package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/variancePartition.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: variancePartition
Version: 1.40.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition
StartedAt: 2025-12-09 00:20:12 -0500 (Tue, 09 Dec 2025)
EndedAt: 2025-12-09 00:44:07 -0500 (Tue, 09 Dec 2025)
EllapsedTime: 1434.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition
###
##############################################################################
##############################################################################


* checking for file ‘variancePartition/DESCRIPTION’ ... OK
* preparing ‘variancePartition’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: variancePartition
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘FAQ.Rmd’ using rmarkdown
--- finished re-building ‘FAQ.Rmd’

--- re-building ‘additional_visualization.Rmd’ using rmarkdown

Quitting from additional_visualization.Rmd:41-52 [corStruct]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.fitVarPartModel()`:
! Initial model failed:
the 'findbars' function has moved to the reformulas package. Please update your imports, or ask an upstream package maintainter to do so.
---
Backtrace:
    ▆
 1. ├─variancePartition::fitVarPartModel(geneExpr[1:2, ], form, info)
 2. └─variancePartition::fitVarPartModel(geneExpr[1:2, ], form, info)
 3.   └─variancePartition:::.fitVarPartModel(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'additional_visualization.Rmd' failed with diagnostics:
Initial model failed:
the 'findbars' function has moved to the reformulas package. Please update your imports, or ask an upstream package maintainter to do so.
--- failed re-building ‘additional_visualization.Rmd’

--- re-building ‘dream.Rmd’ using rmarkdown
2025-12-09 00:25:16.544 R[13972:103061850] XType: com.apple.fonts is not accessible.
2025-12-09 00:25:16.545 R[13972:103061850] XType: XTFontStaticRegistry is enabled.

Quitting from dream.Rmd:255-261 [define]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plotCompareP()`:
! p1, p2 and vpDonor must have the same number of entries
---
Backtrace:
    ▆
 1. └─variancePartition::plotCompareP(p1, p2, vp$Individual, dupcor$consensus)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'dream.Rmd' failed with diagnostics:
p1, p2 and vpDonor must have the same number of entries
--- failed re-building ‘dream.Rmd’

--- re-building ‘errors.Rmd’ using rmarkdown
--- finished re-building ‘errors.Rmd’

--- re-building ‘mvtests.Rmd’ using rmarkdown
--- finished re-building ‘mvtests.Rmd’

--- re-building ‘rnd_effects.Rmd’ using rmarkdown
--- finished re-building ‘rnd_effects.Rmd’

--- re-building ‘variancePartition.Rmd’ using rmarkdown
--- finished re-building ‘variancePartition.Rmd’

SUMMARY: processing the following files failed:
  ‘additional_visualization.Rmd’ ‘dream.Rmd’

Error: Vignette re-building failed.
Execution halted