Vilhelm Suksi
| Snapshot Date: 2025-12-18 13:45 -0500 (Thu, 18 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/notameStats |
| git_branch: RELEASE_3_22 |
| git_last_commit: 58a6cb5 |
| git_last_commit_date: 2025-10-29 11:38:32 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-22 12:04 -0500 (Mon, 22 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4883 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4673 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4607 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1474/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| notameStats 1.0.0 (landing page) Vilhelm Suksi
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the notameStats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/notameStats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: notameStats |
| Version: 1.0.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:notameStats.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings notameStats_1.0.0.tar.gz |
| StartedAt: 2025-12-19 08:20:11 -0500 (Fri, 19 Dec 2025) |
| EndedAt: 2025-12-19 08:31:46 -0500 (Fri, 19 Dec 2025) |
| EllapsedTime: 694.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: notameStats.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:notameStats.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings notameStats_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/notameStats.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘notameStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘notameStats’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘notameStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
perform_auc 41.531 6.597 17.123
perform_lmer 38.297 5.091 15.393
pls_da 39.951 1.268 47.115
muvr_analysis 35.947 0.929 42.347
perform_non_parametric 19.418 8.096 11.008
perform_correlation_tests 14.845 6.655 11.226
pls 19.384 0.564 22.796
perform_logistic 11.884 4.705 5.389
perform_homoscedasticity_tests 11.666 4.840 5.424
perform_lm 9.547 4.745 4.146
summary_statistics 5.857 3.808 2.403
summarize_results 5.987 2.332 3.514
perform_lm_anova 5.110 2.765 2.575
perform_oneway_anova 4.361 2.172 2.181
perform_t_test 3.486 2.339 3.438
perform_kruskal_wallis 3.455 1.831 2.211
cohens_d 4.399 0.720 4.976
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.22-bioc/meat/notameStats.Rcheck/00check.log’
for details.
notameStats.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL notameStats ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘notameStats’ ... ** this is package ‘notameStats’ version ‘1.0.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (notameStats)
notameStats.Rcheck/tests/testthat.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(notameStats)
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: 'generics'
The following objects are masked from 'package:base':
as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
setequal, union
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: Seqinfo
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:MatrixGenerics':
rowMedians
The following objects are masked from 'package:matrixStats':
anyMissing, rowMedians
>
> test_check("notameStats")
Running tests in parallel requires the 3rd edition.
INFO [2025-12-19 08:30:12] Starting to compute Cohen's D between groups B & A from time change 2 - 1
INFO [2025-12-19 08:30:12] Cohen's D computed.
INFO [2025-12-19 08:30:12] Starting to compute Cohen's D between groups B & A
INFO [2025-12-19 08:30:13] Cohen's D computed.
INFO [2025-12-19 08:30:14] Starting to compute fold changes.
INFO [2025-12-19 08:30:14] Fold changes computed.
INFO [2025-12-19 08:30:14] Starting to compute fold changes.
INFO [2025-12-19 08:30:14] Fold changes computed.
INFO [2025-12-19 08:30:15] Starting linear regression.
INFO [2025-12-19 08:30:19] Linear regression performed.
INFO [2025-12-19 08:30:19] Starting linear regression.
INFO [2025-12-19 08:30:23] Linear regression performed.
INFO [2025-12-19 08:30:23]
92% of features flagged for low quality
INFO [2025-12-19 08:30:23] Starting linear regression.
INFO [2025-12-19 08:30:27] Linear regression performed.
INFO [2025-12-19 08:30:28] Starting logistic regression
INFO [2025-12-19 08:30:32] Logistic regression performed.
INFO [2025-12-19 08:30:33] Starting logistic regression
INFO [2025-12-19 08:30:37] Logistic regression performed.
INFO [2025-12-19 08:30:38] Starting to compute Cohen's D between groups B & A
INFO [2025-12-19 08:30:39] Cohen's D computed.
INFO [2025-12-19 08:30:39] Starting to compute Cohen's D between groups C & A
INFO [2025-12-19 08:30:39] Cohen's D computed.
INFO [2025-12-19 08:30:39] Starting to compute Cohen's D between groups C & B
INFO [2025-12-19 08:30:39] Cohen's D computed.
INFO [2025-12-19 08:30:41] Starting to compute Cohen's D between groups B & A from time change 2 - 1
INFO [2025-12-19 08:30:41] Cohen's D computed.
INFO [2025-12-19 08:30:42] Starting to compute Cohen's D between groups B & A from time change 3 - 1
INFO [2025-12-19 08:30:42] Cohen's D computed.
INFO [2025-12-19 08:30:42] Starting to compute Cohen's D between groups B & A from time change 3 - 2
INFO [2025-12-19 08:30:42] Cohen's D computed.
INFO [2025-12-19 08:30:42] Starting to compute Cohen's D between groups C & A from time change 2 - 1
INFO [2025-12-19 08:30:43] Cohen's D computed.
INFO [2025-12-19 08:30:43] Starting to compute Cohen's D between groups C & A from time change 3 - 1
INFO [2025-12-19 08:30:43] Cohen's D computed.
INFO [2025-12-19 08:30:43] Starting to compute Cohen's D between groups C & A from time change 3 - 2
INFO [2025-12-19 08:30:43] Cohen's D computed.
INFO [2025-12-19 08:30:44] Starting to compute Cohen's D between groups C & B from time change 2 - 1
INFO [2025-12-19 08:30:44] Cohen's D computed.
INFO [2025-12-19 08:30:44] Starting to compute Cohen's D between groups C & B from time change 3 - 1
INFO [2025-12-19 08:30:44] Cohen's D computed.
INFO [2025-12-19 08:30:45] Starting to compute Cohen's D between groups C & B from time change 3 - 2
INFO [2025-12-19 08:30:45] Cohen's D computed.
INFO [2025-12-19 08:30:45] Starting to compute Cohen's D between groups B & A from time change 2 - 1
INFO [2025-12-19 08:30:46] Cohen's D computed.
INFO [2025-12-19 08:30:46] Starting to compute Cohen's D between groups B & A from time change 3 - 1
INFO [2025-12-19 08:30:46] Cohen's D computed.
INFO [2025-12-19 08:30:46] Starting to compute Cohen's D between groups B & A from time change 3 - 2
INFO [2025-12-19 08:30:47] Cohen's D computed.
INFO [2025-12-19 08:30:47] Starting to compute Cohen's D between groups C & A from time change 2 - 1
INFO [2025-12-19 08:30:47] Cohen's D computed.
INFO [2025-12-19 08:30:47] Starting to compute Cohen's D between groups C & A from time change 3 - 1
INFO [2025-12-19 08:30:47] Cohen's D computed.
INFO [2025-12-19 08:30:48] Starting to compute Cohen's D between groups C & A from time change 3 - 2
INFO [2025-12-19 08:30:48] Cohen's D computed.
INFO [2025-12-19 08:30:48] Starting to compute Cohen's D between groups C & B from time change 2 - 1
INFO [2025-12-19 08:30:48] Cohen's D computed.
INFO [2025-12-19 08:30:48] Starting to compute Cohen's D between groups C & B from time change 3 - 1
INFO [2025-12-19 08:30:49] Cohen's D computed.
INFO [2025-12-19 08:30:49] Starting to compute Cohen's D between groups C & B from time change 3 - 2
INFO [2025-12-19 08:30:49] Cohen's D computed.
INFO [2025-12-19 08:30:49] Starting to compute Cohen's D between groups B & A from time change 2 - 1
INFO [2025-12-19 08:30:50] Cohen's D computed.
INFO [2025-12-19 08:30:50] Starting to compute Cohen's D between groups B & A from time change 3 - 1
INFO [2025-12-19 08:30:50] Cohen's D computed.
INFO [2025-12-19 08:30:50] Starting to compute Cohen's D between groups B & A from time change 3 - 2
INFO [2025-12-19 08:30:50] Cohen's D computed.
INFO [2025-12-19 08:30:51] Starting to compute Cohen's D between groups C & A from time change 2 - 1
INFO [2025-12-19 08:30:51] Cohen's D computed.
INFO [2025-12-19 08:30:51] Starting to compute Cohen's D between groups C & B from time change 2 - 1
INFO [2025-12-19 08:30:52] Cohen's D computed.
INFO [2025-12-19 08:30:52] Starting to compute Cohen's D between groups B & A from time change 2 - 1
INFO [2025-12-19 08:30:52] Cohen's D computed.
INFO [2025-12-19 08:30:52] Starting to compute Cohen's D between groups B & A from time change 3 - 1
INFO [2025-12-19 08:30:53] Cohen's D computed.
INFO [2025-12-19 08:30:53] Starting to compute Cohen's D between groups B & A from time change 3 - 2
INFO [2025-12-19 08:30:53] Cohen's D computed.
INFO [2025-12-19 08:30:53] Starting to compute Cohen's D between groups C & A from time change 2 - 1
INFO [2025-12-19 08:30:54] Cohen's D computed.
INFO [2025-12-19 08:30:54] Starting to compute Cohen's D between groups C & B from time change 2 - 1
INFO [2025-12-19 08:30:54] Cohen's D computed.
INFO [2025-12-19 08:30:55] Starting to compute Cohen's D between groups B & A from time change 3 - 2
INFO [2025-12-19 08:30:55] Cohen's D computed.
INFO [2025-12-19 08:30:55] Starting to compute Cohen's D between groups C & A from time change 2 - 1
INFO [2025-12-19 08:30:55] Cohen's D computed.
INFO [2025-12-19 08:30:56] Starting to compute Cohen's D between groups C & A from time change 3 - 1
INFO [2025-12-19 08:30:56] Cohen's D computed.
INFO [2025-12-19 08:30:56] Starting to compute Cohen's D between groups C & A from time change 3 - 2
INFO [2025-12-19 08:30:56] Cohen's D computed.
INFO [2025-12-19 08:30:57] Starting to compute Cohen's D between groups C & B from time change 2 - 1
INFO [2025-12-19 08:30:57] Cohen's D computed.
INFO [2025-12-19 08:30:57] Starting to compute Cohen's D between groups C & B from time change 3 - 1
INFO [2025-12-19 08:30:57] Cohen's D computed.
INFO [2025-12-19 08:30:57] Starting to compute Cohen's D between groups C & B from time change 3 - 2
INFO [2025-12-19 08:30:58] Cohen's D computed.
INFO [2025-12-19 08:30:58] Starting paired tests for 1 & 2
INFO [2025-12-19 08:30:58] Found 20 complete pairs.
INFO [2025-12-19 08:30:58] Paired tests performed.
INFO [2025-12-19 08:30:59] Starting tests for 1 & 2
INFO [2025-12-19 08:30:59] Tests performed
INFO [2025-12-19 08:30:59] Starting tests for 1 & 3
INFO [2025-12-19 08:31:00] Tests performed
INFO [2025-12-19 08:31:00] Starting tests for 2 & 3
INFO [2025-12-19 08:31:01] Tests performed
INFO [2025-12-19 08:31:01] Starting tests for 1 & 2
INFO [2025-12-19 08:31:01] Tests performed
INFO [2025-12-19 08:31:01] Starting tests for 1 & 3
INFO [2025-12-19 08:31:02] Tests performed
INFO [2025-12-19 08:31:02] Starting tests for 2 & 3
INFO [2025-12-19 08:31:02] Tests performed
INFO [2025-12-19 08:31:03] Starting paired tests for 1 & 2
INFO [2025-12-19 08:31:03] Found 4 complete pairs.
INFO [2025-12-19 08:31:03] Paired tests performed.
INFO [2025-12-19 08:31:03] Starting paired tests for 1 & 3
INFO [2025-12-19 08:31:03] Found 4 complete pairs.
INFO [2025-12-19 08:31:03] Paired tests performed.
INFO [2025-12-19 08:31:04] Starting paired tests for 2 & 3
INFO [2025-12-19 08:31:04] Found 4 complete pairs.
INFO [2025-12-19 08:31:04] Paired tests performed.
INFO [2025-12-19 08:31:05] Starting paired tests for 1 & 2
INFO [2025-12-19 08:31:05] Found 8 complete pairs.
INFO [2025-12-19 08:31:05] Paired tests performed.
INFO [2025-12-19 08:31:05] Starting paired tests for 1 & 3
INFO [2025-12-19 08:31:05] Found 8 complete pairs.
INFO [2025-12-19 08:31:05] Paired tests performed.
INFO [2025-12-19 08:31:06] Starting paired tests for 2 & 3
INFO [2025-12-19 08:31:06] Found 8 complete pairs.
INFO [2025-12-19 08:31:06] Paired tests performed.
INFO [2025-12-19 08:31:06] Starting paired tests for 1 & 2
INFO [2025-12-19 08:31:06] Found 4 complete pairs.
INFO [2025-12-19 08:31:07] Paired tests performed.
INFO [2025-12-19 08:31:07] Starting paired tests for 1 & 3
INFO [2025-12-19 08:31:07] Found 4 complete pairs.
INFO [2025-12-19 08:31:07] Paired tests performed.
INFO [2025-12-19 08:31:07] Starting paired tests for 2 & 3
INFO [2025-12-19 08:31:07] Found 4 complete pairs.
INFO [2025-12-19 08:31:08] Paired tests performed.
INFO [2025-12-19 08:31:09] Starting tests for A & B
INFO [2025-12-19 08:31:11] Tests performed
INFO [2025-12-19 08:31:13] Starting paired tests for 1 & 2
INFO [2025-12-19 08:31:13] Found 20 complete pairs.
INFO [2025-12-19 08:31:15] Paired tests performed.
INFO [2025-12-19 08:31:16] Starting tests for 1 & 2
INFO [2025-12-19 08:31:17] Tests performed
INFO [2025-12-19 08:31:17] Starting tests for 1 & 3
INFO [2025-12-19 08:31:18] Tests performed
INFO [2025-12-19 08:31:18] Starting tests for 2 & 3
INFO [2025-12-19 08:31:19] Tests performed
INFO [2025-12-19 08:31:19] Starting tests for 1 & 2
INFO [2025-12-19 08:31:20] Tests performed
INFO [2025-12-19 08:31:20] Starting tests for 1 & 3
INFO [2025-12-19 08:31:22] Tests performed
INFO [2025-12-19 08:31:22] Starting tests for 2 & 3
INFO [2025-12-19 08:31:23] Tests performed
INFO [2025-12-19 08:31:23] Starting paired tests for 1 & 2
INFO [2025-12-19 08:31:23] Found 4 complete pairs.
INFO [2025-12-19 08:31:24] Paired tests performed.
INFO [2025-12-19 08:31:24] Starting paired tests for 1 & 3
INFO [2025-12-19 08:31:24] Found 4 complete pairs.
INFO [2025-12-19 08:31:24] Paired tests performed.
INFO [2025-12-19 08:31:24] Starting paired tests for 2 & 3
INFO [2025-12-19 08:31:24] Found 4 complete pairs.
INFO [2025-12-19 08:31:25] Paired tests performed.
INFO [2025-12-19 08:31:25] Starting correlation tests.
INFO [2025-12-19 08:31:25] Performing correlation tests for single object
INFO [2025-12-19 08:31:25] Correlation tests performed.
INFO [2025-12-19 08:31:25] Starting correlation tests.
INFO [2025-12-19 08:31:26] Starting correlation tests.
INFO [2025-12-19 08:31:26] Starting correlation tests.
INFO [2025-12-19 08:31:26] Starting correlation tests.
INFO [2025-12-19 08:31:26] Performing correlation tests for two objects
INFO [2025-12-19 08:31:26] Correlation tests performed.
INFO [2025-12-19 08:31:26] Starting correlation tests.
INFO [2025-12-19 08:31:27] Performing correlation tests for two objects
INFO [2025-12-19 08:31:27] Correlation tests performed.
INFO [2025-12-19 08:31:27] Starting paired tests for 1 & 2
INFO [2025-12-19 08:31:27] Found 20 complete pairs.
INFO [2025-12-19 08:31:29] Paired tests performed.
INFO [2025-12-19 08:31:30] Starting tests for A & B
INFO [2025-12-19 08:31:30] Tests performed
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 88 ]
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 88 ]
>
> proc.time()
user system elapsed
130.574 56.702 107.353
notameStats.Rcheck/notameStats-Ex.timings
| name | user | system | elapsed | |
| cohens_d | 4.399 | 0.720 | 4.976 | |
| fit_rf | 0.344 | 0.055 | 0.457 | |
| fold_change | 1.094 | 0.881 | 0.771 | |
| importance_rf | 0.355 | 0.055 | 0.455 | |
| muvr_analysis | 35.947 | 0.929 | 42.347 | |
| perform_auc | 41.531 | 6.597 | 17.123 | |
| perform_correlation_tests | 14.845 | 6.655 | 11.226 | |
| perform_homoscedasticity_tests | 11.666 | 4.840 | 5.424 | |
| perform_kruskal_wallis | 3.455 | 1.831 | 2.211 | |
| perform_lm | 9.547 | 4.745 | 4.146 | |
| perform_lm_anova | 5.110 | 2.765 | 2.575 | |
| perform_lmer | 38.297 | 5.091 | 15.393 | |
| perform_logistic | 11.884 | 4.705 | 5.389 | |
| perform_non_parametric | 19.418 | 8.096 | 11.008 | |
| perform_oneway_anova | 4.361 | 2.172 | 2.181 | |
| perform_permanova | 3.025 | 0.264 | 3.775 | |
| perform_t_test | 3.486 | 2.339 | 3.438 | |
| pls | 19.384 | 0.564 | 22.796 | |
| pls_da | 39.951 | 1.268 | 47.115 | |
| summarize_results | 5.987 | 2.332 | 3.514 | |
| summary_statistics | 5.857 | 3.808 | 2.403 | |