Multiple platform build/check report for BioC 3.21 - BUILD results for ChemmineR on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4833
merida1	macOS 12.7.6 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4614
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4555
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4586
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ChemmineR on kjohnson1

To the developers/maintainers of the ChemmineR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChemmineR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ChemmineR

Version: 3.60.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR

StartedAt: 2025-10-13 20:58:33 -0400 (Mon, 13 Oct 2025)

EndedAt: 2025-10-13 20:59:11 -0400 (Mon, 13 Oct 2025)

EllapsedTime: 37.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR
###
##############################################################################
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* checking for file ‘ChemmineR/DESCRIPTION’ ... OK
* preparing ‘ChemmineR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ChemmineR.Rmd’ using rmarkdown
2025-10-13 20:59:06.836 R[63432:453206033] XType: Using static font registry.

Quitting from ChemmineR.Rmd:537-539 [unnamed-chunk-39]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://cluster.hpcc.ucr.edu/~tgirke/Documents/R_BioCond/Samples/v3000.sdf'
---
Backtrace:
    ▆
 1. └─ChemmineR::read.SDFset(...)
 2.   └─ChemmineR::read.SDFstr(sdfstr = sdfstr)
 3.     └─base::readLines(sdfstr)
 4.       └─base::file(con, "r")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ChemmineR.Rmd' failed with diagnostics:
cannot open the connection to 'https://cluster.hpcc.ucr.edu/~tgirke/Documents/R_BioCond/Samples/v3000.sdf'
--- failed re-building ‘ChemmineR.Rmd’

SUMMARY: processing the following file failed:
  ‘ChemmineR.Rmd’

Error: Vignette re-building failed.
Execution halted