##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CBN2Path.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CBN2Path_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/CBN2Path.Rcheck’
* using R version 4.5.2 Patched (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CBN2Path/DESCRIPTION’ ... OK
* this is package ‘CBN2Path’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CBN2Path’ can be installed ... WARNING
Found the following significant warnings:
  bcbn.c:554:36: warning: if statement has empty body [-Wempty-body]
  bcbn.c:611:30: warning: if statement has empty body [-Wempty-body]
  bcbn.c:623:43: warning: if statement has empty body [-Wempty-body]
  bcbn.c:633:45: warning: if statement has empty body [-Wempty-body]
  bcbn.c:931:30: warning: if statement has empty body [-Wempty-body]
  bcbn.c:943:43: warning: if statement has empty body [-Wempty-body]
  bcbn.c:953:45: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:551:36: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:611:36: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:670:30: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:682:43: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:692:45: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:719:33: warning: if statement has empty body [-Wempty-body]
See ‘/Users/biocbuild/bbs-3.22-bioc/meat/CBN2Path.Rcheck/00install.out’ for details.
* used C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file in a non-standard place:
  CITATION.cff
Most likely ‘inst/CITATION’ should be used instead.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bcbn: no visible global function definition for ‘SnowParam’
bcbn: no visible binding for global variable ‘datasets’
ctcbn: no visible global function definition for ‘SnowParam’
generateGeomNodePoint: no visible binding for global variable ‘nodes’
generateGeomNodeText: no visible binding for global variable ‘nodes’
generateGgText: no visible binding for global variable ‘x’
generateGgText: no visible binding for global variable ‘y’
generateGgText: no visible binding for global variable ‘label’
generateMatrixGenotypes : f1 : <anonymous>: no visible global function
  definition for ‘combn’
hcbn: no visible global function definition for ‘SnowParam’
variableCapSize: no visible binding for global variable ‘edges’
variableCapSize: no visible binding for global variable ‘x’
variableCapSize: no visible binding for global variable ‘y’
visualizeCBNModel: no visible binding for global variable ‘name’
visualizeFitnessLandscape: no visible binding for global variable ‘x’
visualizeFitnessLandscape: no visible binding for global variable ‘y’
visualizeFitnessLandscape: no visible binding for global variable
  ‘name’
visualizeProbabilities: no visible binding for global variable ‘name’
Undefined global functions or variables:
  SnowParam combn datasets edges label name nodes x y
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/CBN2Path/libs/CBN2Path.so’:
  Found ‘___stderrp’, possibly from ‘stderr’ (C)
  Found ‘___stdoutp’, possibly from ‘stdout’ (C)
  Found ‘_abort’, possibly from ‘abort’ (C)
  Found ‘_printf’, possibly from ‘printf’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
hcbnSingle              90.766  0.541 141.386
pathProbQuartetBCBN     37.221  2.056  61.315
visualizeProbabilities  37.532  0.288  58.690
bcbn                    16.591  8.568  39.324
jensenShannonDivergence 14.154  2.793  25.779
pathProbQuartetRCBN     11.189  2.667  21.334
Predictability          10.909  1.467  20.113
pathProbQuartetHCBN      8.889  2.340  17.851
pathProbQuartetCTCBN     8.516  2.106  16.574
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/CBN2Path.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CBN2Path
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘CBN2Path’ ...
** this is package ‘CBN2Path’ version ‘1.0.0’
** using staged installation
checking for gcc... clang -arch arm64 -std=gnu2x
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang -arch arm64 -std=gnu2x accepts -g... yes
checking for clang -arch arm64 -std=gnu2x option to enable C11 features... -std=gnu11
checking for gsl-config... /opt/R/arm64/bin/gsl-config
checking if GSL version >= 2.5... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bcbn.c -o bcbn.o
bcbn.c:433:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
bcbn.c:554:36: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d %d", N, &p));
                                   ^
bcbn.c:554:36: note: put the semicolon on a separate line to silence this warning
bcbn.c:611:30: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d", &n));
                             ^
bcbn.c:611:30: note: put the semicolon on a separate line to silence this warning
bcbn.c:623:43: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input,"%d %d", &left, &right));
                                          ^
bcbn.c:623:43: note: put the semicolon on a separate line to silence this warning
bcbn.c:633:45: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input,"%d %d", &left, &right));
                                            ^
bcbn.c:633:45: note: put the semicolon on a separate line to silence this warning
bcbn.c:641:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
bcbn.c:931:30: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d", &n));
                             ^
bcbn.c:931:30: note: put the semicolon on a separate line to silence this warning
bcbn.c:943:43: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input,"%d %d", &left, &right));
                                          ^
bcbn.c:943:43: note: put the semicolon on a separate line to silence this warning
bcbn.c:953:45: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input,"%d %d", &left, &right));
                                            ^
bcbn.c:953:45: note: put the semicolon on a separate line to silence this warning
bcbn.c:1056:9: warning: unused variable 'j' [-Wunused-variable]
  int i,j,c,k;
        ^
bcbn.c:1056:13: warning: unused variable 'k' [-Wunused-variable]
  int i,j,c,k;
            ^
bcbn.c:1075:10: warning: variable 'p' set but not used [-Wunused-but-set-variable]
  double p = 0;
         ^
bcbn.c:1281:15: warning: unused variable 'likelihood' [-Wunused-variable]
  long double likelihood, likelihood_d;
              ^
bcbn.c:1367:21: warning: unused variable 'var' [-Wunused-variable]
  double alpha,beta,var,x;
                    ^
bcbn.c:1367:25: warning: variable 'x' set but not used [-Wunused-but-set-variable]
  double alpha,beta,var,x;
                        ^
bcbn.c:1380:21: warning: unused variable 'var' [-Wunused-variable]
  double alpha,beta,var,x;
                    ^
bcbn.c:1380:25: warning: variable 'x' set but not used [-Wunused-but-set-variable]
  double alpha,beta,var,x;
                        ^
bcbn.c:1449:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1550:11: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,N_all_comp,N_compatible,k;
          ^
bcbn.c:1550:22: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,N_all_comp,N_compatible,k;
                     ^
bcbn.c:1550:35: warning: unused variable 'k' [-Wunused-variable]
  int i,j,N_all_comp,N_compatible,k;
                                  ^
bcbn.c:1675:10: warning: unused variable 'alpha' [-Wunused-variable]
  double alpha,beta,var,x;
         ^
bcbn.c:1675:16: warning: unused variable 'beta' [-Wunused-variable]
  double alpha,beta,var,x;
               ^
bcbn.c:1675:21: warning: unused variable 'var' [-Wunused-variable]
  double alpha,beta,var,x;
                    ^
bcbn.c:1675:25: warning: unused variable 'x' [-Wunused-variable]
  double alpha,beta,var,x;
                        ^
bcbn.c:1755:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1878:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1878:13: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
            ^
bcbn.c:1878:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,k,N_compatible,N_all_comp;
                         ^
bcbn.c:1946:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1946:13: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
            ^
bcbn.c:1946:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,k,N_compatible,N_all_comp;
                         ^
bcbn.c:1957:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
bcbn.c:1997:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1997:13: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
            ^
bcbn.c:1997:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,k,N_compatible,N_all_comp;
                         ^
bcbn.c:2008:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
bcbn.c:2358:7: warning: unused variable 'i' [-Wunused-variable]
  int i,j,k = 0;
      ^
bcbn.c:2358:9: warning: unused variable 'j' [-Wunused-variable]
  int i,j,k = 0;
        ^
bcbn.c:2362:7: warning: unused variable 'accepted' [-Wunused-variable]
  int accepted = 0;
      ^
bcbn.c:2620:22: warning: unused variable 'MH_ratio' [-Wunused-variable]
  long double alpha, MH_ratio;
                     ^
bcbn.c:2630:7: warning: variable 'accepted' set but not used [-Wunused-but-set-variable]
  int accepted = 0;
      ^
bcbn.c:2633:7: warning: variable 'n_edges' set but not used [-Wunused-but-set-variable]
  int n_edges = 0;
      ^
43 warnings generated.
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ctcbn.c -o ctcbn.o
In file included from ctcbn.c:3:
./ct-cbn.h:184:7: warning: unused variable 'j' [-Wunused-variable]
  int j;
      ^
./ct-cbn.h:551:36: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d %d", N, &p));
                                   ^
./ct-cbn.h:551:36: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:611:36: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d %d", N, &p));
                                   ^
./ct-cbn.h:611:36: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:670:30: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d", &n));
                             ^
./ct-cbn.h:670:30: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:682:43: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input,"%d %d", &left, &right));
                                          ^
./ct-cbn.h:682:43: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:692:45: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input,"%d %d", &left, &right));
                                            ^
./ct-cbn.h:692:45: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:719:33: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input, "%lf", &x));
                                ^
./ct-cbn.h:719:33: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:803:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
./ct-cbn.h:2721:17: warning: variable 'alpha_new' set but not used [-Wunused-but-set-variable]
  double alpha, alpha_new;
                ^
./ct-cbn.h:3305:7: warning: variable 'mut_next' set but not used [-Wunused-but-set-variable]
  int mut_next, index_next;
      ^
ctcbn.c:79:7: warning: unused variable 'verbose' [-Wunused-variable]
  int verbose = 0;
      ^
ctcbn.c:84:7: warning: unused variable 'GPS' [-Wunused-variable]
  int GPS = 0;
      ^
ctcbn.c:88:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
ctcbn.c:302:7: warning: unused variable 'error_flag' [-Wunused-variable]
  int error_flag = 0;
      ^
ctcbn.c:303:7: warning: unused variable 'f_flag' [-Wunused-variable]
  int f_flag = 0;
      ^
ctcbn.c:304:7: warning: variable 'e_flag' set but not used [-Wunused-but-set-variable]
  int e_flag = 0;
      ^
ctcbn.c:305:7: warning: unused variable 'gps_flag' [-Wunused-variable]
  int gps_flag = 0;
      ^
ctcbn.c:306:7: warning: unused variable 'l_flag' [-Wunused-variable]
  int l_flag = 0;
      ^
ctcbn.c:308:7: warning: unused variable 't_flag' [-Wunused-variable]
  int t_flag = 1;
      ^
ctcbn.c:313:10: warning: unused variable 'T' [-Wunused-variable]
  double T = REAL(temp)[0];
         ^
ctcbn.c:314:7: warning: variable 'N_iter' set but not used [-Wunused-but-set-variable]
  int N_iter = 0;
      ^
ctcbn.c:319:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
22 warnings generated.
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c queue.c -o queue.o
clang -arch arm64 -std=gnu2x -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o CBN2Path.so bcbn.o ctcbn.o init.o queue.o -L/opt/R/arm64/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-CBN2Path/00new/CBN2Path/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CBN2Path)

R version 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(CBN2Path)
> 
> test_check("CBN2Path")
chain: 1
0
chain: 2
0
chain: 3
0
chain: 4
0
       V1                V2                 V3                  V4         
 Min.   :0.03383   Min.   :0.001813   Min.   :0.0000629   Min.   :0.01415  
 1st Qu.:0.82108   1st Qu.:0.501233   1st Qu.:0.1102881   1st Qu.:0.10104  
 Median :0.90963   Median :0.652944   Median :0.2176119   Median :0.12734  
 Mean   :0.87563   Mean   :0.638892   Mean   :0.2535545   Mean   :0.13054  
 3rd Qu.:0.96113   3rd Qu.:0.791955   3rd Qu.:0.3581963   3rd Qu.:0.15511  
 Max.   :1.00000   Max.   :0.999956   Max.   :0.9991516   Max.   :0.32454  
       V5         
 Min.   :-16.970  
 1st Qu.: -7.762  
 Median : -7.338  
 Mean   : -7.463  
 3rd Qu.: -7.017  
 Max.   : -6.502  
       V1                V2                 V3                  V4         
 Min.   :0.01168   Min.   :0.005197   Min.   :1.647e-05   Min.   :0.02597  
 1st Qu.:0.81291   1st Qu.:0.501572   1st Qu.:1.113e-01   1st Qu.:0.10121  
 Median :0.90646   Median :0.651860   Median :2.177e-01   Median :0.12716  
 Mean   :0.87055   Mean   :0.637937   Mean   :2.532e-01   Mean   :0.12997  
 3rd Qu.:0.96068   3rd Qu.:0.791960   3rd Qu.:3.577e-01   3rd Qu.:0.15563  
 Max.   :0.99996   Max.   :0.999970   Max.   :1.000e+00   Max.   :0.35262  
       V5         
 Min.   :-13.779  
 1st Qu.: -7.771  
 Median : -7.341  
 Mean   : -7.466  
 3rd Qu.: -7.025  
 Max.   : -6.516  
       V1                V2                  V3                  V4         
 Min.   :0.06686   Min.   :8.330e-06   Min.   :2.074e-05   Min.   :0.02753  
 1st Qu.:0.81920   1st Qu.:5.042e-01   1st Qu.:1.088e-01   1st Qu.:0.09861  
 Median :0.90871   Median :6.490e-01   Median :2.139e-01   Median :0.12578  
 Mean   :0.87344   Mean   :6.378e-01   Mean   :2.479e-01   Mean   :0.12965  
 3rd Qu.:0.96082   3rd Qu.:7.879e-01   3rd Qu.:3.503e-01   3rd Qu.:0.15436  
 Max.   :0.99996   Max.   :9.998e-01   Max.   :9.987e-01   Max.   :0.33420  
       V5         
 Min.   :-15.166  
 1st Qu.: -7.776  
 Median : -7.344  
 Mean   : -7.472  
 3rd Qu.: -7.026  
 Max.   : -6.512  
       V1               V2                 V3                  V4         
 Min.   :0.1230   Min.   :0.001037   Min.   :2.967e-05   Min.   :0.02598  
 1st Qu.:0.8172   1st Qu.:0.509768   1st Qu.:1.068e-01   1st Qu.:0.10086  
 Median :0.9066   Median :0.657423   Median :2.146e-01   Median :0.12773  
 Mean   :0.8728   Mean   :0.643039   Mean   :2.467e-01   Mean   :0.13049  
 3rd Qu.:0.9596   3rd Qu.:0.793810   3rd Qu.:3.506e-01   3rd Qu.:0.15461  
 Max.   :1.0000   Max.   :0.999940   Max.   :9.987e-01   Max.   :0.31687  
       V5         
 Min.   :-13.262  
 1st Qu.: -7.747  
 Median : -7.324  
 Mean   : -7.448  
 3rd Qu.: -7.012  
 Max.   : -6.507  
[1] "Criterion: 1.00070569769584"
Potential scale reduction factors:

     Point est. Upper C.I.
[1,]          1          1
[2,]          1          1
[3,]          1          1
[4,]          1          1
[5,]          1          1

Multivariate psrf

1
[1] "##########################################"
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 9 ]

[ FAIL 0 | WARN 2 | SKIP 0 | PASS 9 ]
> 
> proc.time()
   user  system elapsed 
119.049   1.312 186.430