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This page was generated on 2025-09-25 11:41 -0400 (Thu, 25 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4608
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4549
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4581
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 59/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AlpsNMR 4.10.0  (landing page)
Sergio Oller Moreno
Snapshot Date: 2025-09-22 13:40 -0400 (Mon, 22 Sep 2025)
git_url: https://git.bioconductor.org/packages/AlpsNMR
git_branch: RELEASE_3_21
git_last_commit: aa900cf
git_last_commit_date: 2025-04-15 12:14:56 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    ERROR    OK  
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    ERROR    OK  
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for AlpsNMR on kunpeng2

To the developers/maintainers of the AlpsNMR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AlpsNMR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: AlpsNMR
Version: 4.10.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data AlpsNMR
StartedAt: 2025-09-22 22:31:33 -0000 (Mon, 22 Sep 2025)
EndedAt: 2025-09-22 22:33:54 -0000 (Mon, 22 Sep 2025)
EllapsedTime: 140.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data AlpsNMR
###
##############################################################################
##############################################################################


* checking for file ‘AlpsNMR/DESCRIPTION’ ... OK
* preparing ‘AlpsNMR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Vig01-introduction-to-alpsnmr.Rmd’ using rmarkdown
Warning in system2(..., stdout = if (use_file_stdout()) f1 else FALSE, stderr = f2) :
  error in running command
! sh: line 1: lualatex: command not found

Error: processing vignette 'Vig01-introduction-to-alpsnmr.Rmd' failed with diagnostics:
LaTeX failed to compile /home/biocbuild/tmp/RtmpHZOWwQ/Rbuild373ce2c575f97/AlpsNMR/vignettes/Vig01-introduction-to-alpsnmr.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Vig01-introduction-to-alpsnmr.log for more info.
--- failed re-building ‘Vig01-introduction-to-alpsnmr.Rmd’

--- re-building ‘Vig01b-introduction-to-alpsnmr-old-api.Rmd’ using rmarkdown
Warning in system2(..., stdout = if (use_file_stdout()) f1 else FALSE, stderr = f2) :
  error in running command
! sh: line 1: lualatex: command not found

Error: processing vignette 'Vig01b-introduction-to-alpsnmr-old-api.Rmd' failed with diagnostics:
LaTeX failed to compile /home/biocbuild/tmp/RtmpHZOWwQ/Rbuild373ce2c575f97/AlpsNMR/vignettes/Vig01b-introduction-to-alpsnmr-old-api.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Vig01b-introduction-to-alpsnmr-old-api.log for more info.
--- failed re-building ‘Vig01b-introduction-to-alpsnmr-old-api.Rmd’

--- re-building ‘Vig02-handling-metadata-and-annotations.Rmd’ using rmarkdown
Warning in system2(..., stdout = if (use_file_stdout()) f1 else FALSE, stderr = f2) :
  error in running command
! sh: line 1: lualatex: command not found

Error: processing vignette 'Vig02-handling-metadata-and-annotations.Rmd' failed with diagnostics:
LaTeX failed to compile /home/biocbuild/tmp/RtmpHZOWwQ/Rbuild373ce2c575f97/AlpsNMR/vignettes/Vig02-handling-metadata-and-annotations.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Vig02-handling-metadata-and-annotations.log for more info.
--- failed re-building ‘Vig02-handling-metadata-and-annotations.Rmd’

SUMMARY: processing the following files failed:
  ‘Vig01-introduction-to-alpsnmr.Rmd’
  ‘Vig01b-introduction-to-alpsnmr-old-api.Rmd’
  ‘Vig02-handling-metadata-and-annotations.Rmd’

Error: Vignette re-building failed.
Execution halted