Back to Rapid builds (Linux only) of a subset of BioC 3.22
Report updated every 6 hours

This page was generated on 2025-10-30 14:25 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 896
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 104/229HostnameOS / ArchINSTALLBUILDCHECK
ggbio 1.59.0  (landing page)
Michael Lawrence
Snapshot Date: 2025-10-30 12:00 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/ggbio
git_branch: devel
git_last_commit: 6c3efb9
git_last_commit_date: 2025-10-29 10:09:27 -0400 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for ggbio on teran2

To the developers/maintainers of the ggbio package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ggbio
Version: 1.59.0
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggbio
StartedAt: 2025-10-30 12:42:49 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 12:42:50 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggbio
###
##############################################################################
##############################################################################


* checking for file ‘ggbio/DESCRIPTION’ ... OK
* preparing ‘ggbio’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
ERROR: dependencies ‘biovizBase’, ‘GenomicAlignments’, ‘BSgenome’, ‘VariantAnnotation’, ‘rtracklayer’, ‘GenomicFeatures’, ‘OrganismDbi’, ‘ensembldb’ are not available for package ‘ggbio’
Perhaps try a variation of:
install.packages(c('biovizBase', 'GenomicAlignments', 'BSgenome', 'VariantAnnotation', 'rtracklayer', 'GenomicFeatures', 'OrganismDbi', 'ensembldb'))
* removing ‘/tmp/RtmpRv29Jk/Rinst1f9bf4273491ef/ggbio’
      -----------------------------------
ERROR: package installation failed