##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggbio
###
##############################################################################
##############################################################################


* checking for file ‘ggbio/DESCRIPTION’ ... OK
* preparing ‘ggbio’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ggbio.Rnw’ using Sweave
--- finished re-building ‘ggbio.Rnw’

cp realvignettes/*.Rnw .
/home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "library(knitr); knit2pdf('ggbio.Rnw')"


processing file: ggbio.Rnw
1/125                        
2/125 [style-knitr]          
3/125                        
4/125 [setup]                
5/125                        
6/125 [citation]             
7/125                        
8/125 [unnamed-chunk-1]      
9/125                        
10/125 [unnamed-chunk-2]      
11/125                        
12/125 [unnamed-chunk-3]      
13/125                        
14/125 [unnamed-chunk-4]      
15/125                        
16/125 [unnamed-chunk-5]      
Error: database or disk is full

Quitting from ggbio.Rnw:141-156 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! database or disk is full
---
Backtrace:
     x
  1. +-ggplot2::autoplot(...)
  2. \-ggbio::autoplot(...)
  3.   \-ggbio (local) .local(object, ...)
  4.     +-BiocGenerics::do.call(geom_alignment, args.res)
  5.     +-base::do.call(geom_alignment, args.res)
  6.     +-ggbio (local) `<stndrdGn>`(...)
  7.     \-ggbio (local) `<stndrdGn>`(...)
  8.       \-ggbio (local) .local(data, ...)
  9.         +-AnnotationDbi::select(data, ks, columns, "TXID")
 10.         \-OrganismDbi::select(data, ks, columns, "TXID")
 11.           \-OrganismDbi:::.select(x, keys, columns, keytype, ...)
 12.             \-OrganismDbi:::.getSelects(x, keytype, keys, needCols, visitNodes)
 13.               +-base::suppressMessages(...)
 14.               | \-base::withCallingHandlers(...)
 15.               +-AnnotationDbi::select(...)
 16.               \-GenomicFeatures (local) select(...)
 17.                 \-GenomicFeatures:::.select(x, keys, columns, keytype, ...)
 18.                   \-AnnotationDbi:::dbQuery(dbconn(x), sql)
 19.                     +-DBI::dbGetQuery(conn, SQL)
 20.                     \-DBI::dbGetQuery(conn, SQL)
 21.                       \-DBI (local) .local(conn, statement, ...)
 22.                         +-DBI::dbSendQuery(conn, statement, ...)
 23.                         \-RSQLite::dbSendQuery(conn, statement, ...)
 24.                           \-RSQLite (local) .local(conn, statement, ...)
 25.                             +-methods::new(...)
 26.                             | +-methods::initialize(value, ...)
 27.                             | \-methods::initialize(value, ...)
 28.                             \-RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Execution halted
Warning message:
In close.connection(con) :
  Problem closing connection:  No space left on device
make: *** [Makefile:15: ggbio.pdf] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) : 
  running 'make' failed
Execution halted